RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 CFAP52Q8N1V2 620 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 ATP6V0D2Q8N8Y2 350 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 PRELID2Q8N945 189 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 LEMD2Q8NC56 503 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 MYRIPQ8NFW9 859 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 SH3RF2Q8TEC5 729 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 C1orf54Q8WWF1 131 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 PLD4Q96BZ4 506 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 PABPC5Q96DU9 382 aaKnown RBP11.34□□□□□ -0.59
SCN9A-205ENST00000454569 BTN2A3PQ96KV6 586 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 PRICKLE1Q96MT3 831 aaPredicted RBP11.34□□□□□ -0.59
SCN9A-205ENST00000454569 GAS2L1Q99501 681 aaPredicted RBP11.34□□□□□ -0.59
SCN9A-205ENST00000454569 POMKQ9H5K3 350 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 ARHGEF4Q9NR80 690 aa11.34□□□□□ -0.59
SCN9A-205ENST00000454569 RBM12Q9NTZ6 932 aaKnown RBP11.34□□□□□ -0.59
SCN9A-205ENST00000454569 PGRMC1O00264 195 aaKnown RBP11.33□□□□□ -0.6
SCN9A-205ENST00000454569 EEF2KO00418 725 aaKnown RBP11.33□□□□□ -0.6
SCN9A-205ENST00000454569 ZNF197O14709 1029 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 DCLK1O15075 740 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 SNPHO15079 494 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 FGF19O95750 216 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 APOEP02649 317 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 ERCC2P18074 760 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 TACR2P21452 398 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 PTPN7P35236 360 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 NUMBP49757 651 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 TERF1P54274 439 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 AIF1P55008 147 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 COPS2P61201 443 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 GBE1Q04446 702 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 PPP2R5EQ16537 467 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 WHAMMP3Q1A5X7 153 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 ARHGAP15Q53QZ3 475 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 FAM78AQ5JUQ0 283 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 NUGGCQ68CJ6 796 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 NCBP2-AS2Q69YL0 99 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 TTC27Q6P3X3 843 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 C1orf228Q6PIY5 440 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 ELMSAN1Q6PJG2 1045 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 RFX8Q6ZV50 586 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 BBS12Q6ZW61 710 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 DEFB123Q8N688 67 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 NPWQ8N729 165 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 NOA1Q8NC60 698 aaKnown RBP11.33□□□□□ -0.6
SCN9A-205ENST00000454569 ZSCAN18Q8TBC5 510 aaPredicted RBP11.33□□□□□ -0.6
SCN9A-205ENST00000454569 C1orf74Q96LT6 269 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 KLC2Q9H0B6 622 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 LINC00597Q9H2U6 94 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 TDP1Q9NUW8 608 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 ZNF212Q9UDV6 495 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 ARHGAP26Q9UNA1 814 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 GFRA2O00451 464 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 SLU7O95391 586 aaKnown RBP11.33□□□□□ -0.6
SCN9A-205ENST00000454569 SLC2A3P11169 496 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 HOXB8P17481 243 aaPredicted RBP11.33□□□□□ -0.6
SCN9A-205ENST00000454569 SP100P23497 879 aaPredicted RBP11.33□□□□□ -0.6
SCN9A-205ENST00000454569 FCARP24071 287 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 DDX6P26196 483 aaKnown RBP eCLIP11.33□□□□□ -0.6
SCN9A-205ENST00000454569 EPHB2P29323 1055 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 AVPR1AP37288 418 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 KCNJ1P48048 391 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 HARS2P49590 506 aaKnown RBP11.33□□□□□ -0.6
SCN9A-205ENST00000454569 KPNA1P52294 538 aaPredicted RBP11.33□□□□□ -0.6
SCN9A-205ENST00000454569 RPS24P62847 133 aaKnown RBP11.33□□□□□ -0.6
SCN9A-205ENST00000454569 SNX1Q13596 522 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 TUBB2AQ13885 445 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 NAA30Q147X3 362 aaPredicted RBP11.33□□□□□ -0.6
SCN9A-205ENST00000454569 ZNF77Q15935 545 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 ATAT1Q5SQI0 421 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 SLC9A4Q6AI14 798 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 HTR3DQ70Z44 454 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 ZNF572Q7Z3I7 529 aaPredicted RBP11.33□□□□□ -0.6
SCN9A-205ENST00000454569 UNC45BQ8IWX7 931 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 LGI2Q8N0V4 545 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 SMRP1Q8NCR6 262 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 SPATA4Q8NEY3 305 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 OR52K2Q8NGK3 314 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 ZNF670Q9BS34 389 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 TUBB2BQ9BVA1 445 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 PLA2G2FQ9BZM2 168 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 DDX47Q9H0S4 455 aaKnown RBP11.33□□□□□ -0.6
SCN9A-205ENST00000454569 STOML2Q9UJZ1 356 aa11.33□□□□□ -0.6
SCN9A-205ENST00000454569 IGLV3-10A0A075B6K4 115 aa11.32□□□□□ -0.6
SCN9A-205ENST00000454569 UQCRHLA0A096LP55 91 aa11.32□□□□□ -0.6
SCN9A-205ENST00000454569 DRGXA6NNA5 263 aa11.32□□□□□ -0.6
SCN9A-205ENST00000454569 H3BRJ5 948 aa11.32□□□□□ -0.6
SCN9A-205ENST00000454569 KRIT1O00522 736 aa11.32□□□□□ -0.6
SCN9A-205ENST00000454569 MFSD11O43934 449 aa11.32□□□□□ -0.6
SCN9A-205ENST00000454569 UQCRHP07919 91 aa11.32□□□□□ -0.6
SCN9A-205ENST00000454569 HOXC13P31276 330 aa11.32□□□□□ -0.6
SCN9A-205ENST00000454569 ARL4AP40617 200 aa11.32□□□□□ -0.6
SCN9A-205ENST00000454569 NRLP54845 237 aa11.32□□□□□ -0.6
SCN9A-205ENST00000454569 TPI1P60174 286 aa11.32□□□□□ -0.6
SCN9A-205ENST00000454569 NRG1Q02297 640 aaPredicted RBP11.32□□□□□ -0.6
SCN9A-205ENST00000454569 ITIH3Q06033 890 aa11.32□□□□□ -0.6
SCN9A-205ENST00000454569 ODF2Q5BJF6 829 aa11.32□□□□□ -0.6
SCN9A-205ENST00000454569 CCDC181Q5TID7 509 aa11.32□□□□□ -0.6
SCN9A-205ENST00000454569 TANGO2Q6ICL3 276 aa11.32□□□□□ -0.6
SCN9A-205ENST00000454569 RWDD4Q6NW29 188 aaKnown RBP11.32□□□□□ -0.6
SCN9A-205ENST00000454569 PRUNE1Q86TP1 453 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms