RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 HSFY1Q96LI6 401 aa12.29□□□□□ -0.44
SMPD4-213ENST00000454468 APBA2Q99767 749 aa12.29□□□□□ -0.44
SMPD4-213ENST00000454468 NMUR2Q9GZQ4 415 aa12.29□□□□□ -0.44
SMPD4-213ENST00000454468 TASP1Q9H6P5 420 aa12.29□□□□□ -0.44
SMPD4-213ENST00000454468 CHRAC1Q9NRG0 131 aa12.29□□□□□ -0.44
SMPD4-213ENST00000454468 VANGL2Q9ULK5 521 aa12.29□□□□□ -0.44
SMPD4-213ENST00000454468 TRIP11Q15643 1979 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 MT-CO1P00395 513 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 USP10Q14694 798 aaKnown RBP12.28□□□□□ -0.44
SMPD4-213ENST00000454468 ZRSR2Q15696 482 aaKnown RBP12.28□□□□□ -0.44
SMPD4-213ENST00000454468 VWA5B1Q5TIE3 1220 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 OVOS1Q6IE37 1185 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 KHSRPQ92945 711 aaKnown RBP eCLIP12.28□□□□□ -0.44
SMPD4-213ENST00000454468 B3GALT6Q96L58 329 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 TMEM209Q96SK2 561 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 CCDC134Q9H6E4 229 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 XPNPEP3Q9NQH7 507 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 APOBEC2Q9Y235 224 aaKnown RBP12.28□□□□□ -0.44
SMPD4-213ENST00000454468 LOXHD1Q8IVV2 1947 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 XPO1O14980 1071 aaKnown RBP12.28□□□□□ -0.44
SMPD4-213ENST00000454468 SKAP2O75563 359 aaPredicted RBP12.28□□□□□ -0.44
SMPD4-213ENST00000454468 PCSK1P29120 753 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 CACNA2D1P54289 1103 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 PEX6Q13608 980 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 UBAP2LQ14157 1087 aaKnown RBP12.28□□□□□ -0.44
SMPD4-213ENST00000454468 TIGD5Q53EQ6 642 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 MFSD14CQ5VZR4 134 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 THEM5Q8N1Q8 247 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 ZNF513Q8N8E2 541 aaPredicted RBP12.28□□□□□ -0.44
SMPD4-213ENST00000454468 SREK1Q8WXA9 508 aaKnown RBP12.28□□□□□ -0.44
SMPD4-213ENST00000454468 NSL1Q96IY1 281 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 CLPTM1LQ96KA5 538 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 COMMD10Q9Y6G5 202 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 COL1A2P08123 1366 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 ARL5CA6NH57 179 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 E9PBE3 544 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 KLHL41O60662 606 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 SOAT2O75908 522 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 MT-CYBP00156 380 aaPredicted RBP12.28□□□□□ -0.44
SMPD4-213ENST00000454468 AKR1A1P14550 325 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 FLT3LGP49771 235 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 MAXP61244 160 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 MRPS6P82932 125 aaKnown RBP12.28□□□□□ -0.44
SMPD4-213ENST00000454468 THOC5Q13769 683 aaKnown RBP12.28□□□□□ -0.44
SMPD4-213ENST00000454468 TAF12Q16514 161 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 DDR2Q16832 855 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 RNF43Q68DV7 783 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 CLNKQ7Z7G1 428 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 ZDHHC17Q8IUH5 632 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 ATPAF2Q8N5M1 289 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 SMG8Q8ND04 991 aaKnown RBP12.28□□□□□ -0.44
SMPD4-213ENST00000454468 ZFYVE28Q9HCC9 887 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 CRTAC1Q9NQ79 661 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 SLC38A7Q9NVC3 462 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 PADI3Q9ULW8 664 aa12.28□□□□□ -0.44
SMPD4-213ENST00000454468 TTC24A2A3L6 582 aaPredicted RBP12.27□□□□□ -0.44
SMPD4-213ENST00000454468 BCLAF3A2AJT9 711 aaKnown RBP12.27□□□□□ -0.44
SMPD4-213ENST00000454468 NT5C1B-RDH14C9J2C7 533 aa12.27□□□□□ -0.44
SMPD4-213ENST00000454468 CCL22O00626 93 aa12.27□□□□□ -0.44
SMPD4-213ENST00000454468 C2CD2LO14523 706 aa12.27□□□□□ -0.44
SMPD4-213ENST00000454468 TDRPQ86YL5 185 aa12.27□□□□□ -0.44
SMPD4-213ENST00000454468 DENND1AQ8TEH3 1009 aa12.27□□□□□ -0.44
SMPD4-213ENST00000454468 OXNAD1Q96HP4 312 aaPredicted RBP12.27□□□□□ -0.44
SMPD4-213ENST00000454468 SEPT5Q99719 369 aaPredicted RBP12.27□□□□□ -0.44
SMPD4-213ENST00000454468 SPON2Q9BUD6 331 aa12.27□□□□□ -0.44
SMPD4-213ENST00000454468 AGO3Q9H9G7 860 aaKnown RBP12.27□□□□□ -0.44
SMPD4-213ENST00000454468 TRMT13Q9NUP7 481 aaKnown RBP12.27□□□□□ -0.44
SMPD4-213ENST00000454468 SMAPO00193 183 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 TXNDC9O14530 226 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 PTGESO14684 152 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 VAPBO95292 243 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 CPB1P15086 417 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 PTPN7P35236 360 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 USP4Q13107 963 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 DPYSL2Q16555 572 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 SLC39A12Q504Y0 691 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 TNFAIP8L3Q5GJ75 292 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 C1orf146Q5VVC0 180 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 GDF6Q6KF10 455 aaPredicted RBP12.27□□□□□ -0.45
SMPD4-213ENST00000454468 FAM117BQ6P1L5 589 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 RFWD3Q6PCD5 774 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 TRIM42Q8IWZ5 723 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 AGGF1Q8N302 714 aaeCLIP12.27□□□□□ -0.45
SMPD4-213ENST00000454468 CXorf38Q8TB03 319 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 PDCD6IPQ8WUM4 868 aaKnown RBP12.27□□□□□ -0.45
SMPD4-213ENST00000454468 TEKT4Q8WW24 435 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 EBF4Q9BQW3 602 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 CYP4F12Q9HCS2 524 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.27□□□□□ -0.45
SMPD4-213ENST00000454468 TNS1Q9HBL0 1735 aaKnown RBP12.27□□□□□ -0.45
SMPD4-213ENST00000454468 SPECC1L-ADORA2AF8WAN1 911 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 PIRO00625 290 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 CCDC22O60826 627 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 SERPINB6P35237 376 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 FDFT1P37268 417 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 PBX3P40426 434 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 NR2C2P49116 596 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 EFEMP1Q12805 493 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 CTBP1Q13363 440 aa12.27□□□□□ -0.45
SMPD4-213ENST00000454468 CRYMQ14894 314 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms