RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 TPMTP51580 245 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 IRX4P78413 519 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 MTA1Q13330 715 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 CDH18Q13634 790 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 STX1AQ16623 288 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 DUOXA1Q1HG43 343 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 FSCBQ5H9T9 825 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 TTC39BQ5VTQ0 682 aaPredicted RBP12.46□□□□□ -0.41
USP40-210ENST00000454354 OTUD1Q5VV17 481 aaPredicted RBP12.46□□□□□ -0.41
USP40-210ENST00000454354 RAP1GAP2Q684P5 730 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 CHSY1Q86X52 802 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 LGI2Q8N0V4 545 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 CARNMT1Q8N4J0 409 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 KDM1BQ8NB78 822 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 PRCCQ92733 491 aaPredicted RBP12.46□□□□□ -0.41
USP40-210ENST00000454354 FOXJ1Q92949 421 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 HSPA12BQ96MM6 686 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 NUSAP1Q9BXS6 441 aaKnown RBP12.46□□□□□ -0.41
USP40-210ENST00000454354 CAPN10Q9HC96 672 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 TMEM9BQ9NQ34 198 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 ANO10Q9NW15 660 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 DDIT4Q9NX09 232 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 RRN3Q9NYV6 651 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 STIM2Q9P246 746 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 SLC12A6Q9UHW9 1150 aa12.46□□□□□ -0.41
USP40-210ENST00000454354 ITIH6Q6UXX5 1313 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 C4orf47A7E2U8 309 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 F5H5T6 163 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 NDUFS2O75306 463 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 SERPINF2P08697 491 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 ABCB4P21439 1286 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 CSKP41240 450 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 MATKP42679 507 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 JAM2P57087 298 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 MYL5Q02045 173 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 ZBTB16Q05516 673 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 ARID5BQ14865 1188 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 PITRM1Q5JRX3 1037 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 SASS6Q6UVJ0 657 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 NOP9Q86U38 636 aaKnown RBP12.45□□□□□ -0.42
USP40-210ENST00000454354 ZNF677Q86XU0 584 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 XYLT1Q86Y38 959 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 CCDC117Q8IWD4 279 aaPredicted RBP12.45□□□□□ -0.42
USP40-210ENST00000454354 CFAP52Q8N1V2 620 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 ZNF366Q8N895 744 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 CADM4Q8NFZ8 388 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 EPS8L1Q8TE68 723 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 NT5C3BQ969T7 300 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 PGAP3Q96FM1 320 aaPredicted RBP12.45□□□□□ -0.42
USP40-210ENST00000454354 TOE1Q96GM8 510 aaKnown RBP12.45□□□□□ -0.42
USP40-210ENST00000454354 MRGPRX3Q96LB0 322 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 NPY6RQ99463 290 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 ADAM33Q9BZ11 813 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 VPS16Q9H269 839 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 SYNCQ9H7C4 482 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 PRSS16Q9NQE7 514 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 FANCLQ9NW38 375 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 SUN2Q9UH99 717 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 LIMA1Q9UHB6 759 aaKnown RBP12.45□□□□□ -0.42
USP40-210ENST00000454354 NOCTQ9UK39 431 aaKnown RBP12.45□□□□□ -0.42
USP40-210ENST00000454354 SIK3Q9Y2K2 1263 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 KNL1Q8NG31 2342 aa12.45□□□□□ -0.42
USP40-210ENST00000454354 MAP1BP46821 2468 aaKnown RBP12.45□□□□□ -0.42
USP40-210ENST00000454354 SYNJ2BP-COX16A0A087WUM0 186 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 A0A1B0GVM2 712 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 TCAF2A6NFQ2 919 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 H0Y626 953 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 TPM2P07951 284 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 SRPRAP08240 638 aaKnown RBP12.44□□□□□ -0.42
USP40-210ENST00000454354 ACADMP11310 421 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 ZNF18P17022 549 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 ENGP17813 658 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 KLK7P49862 253 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 NOMO3P69849 1222 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 SLC12A1Q13621 1099 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 HNRNPA1L2Q32P51 320 aaKnown RBP12.44□□□□□ -0.42
USP40-210ENST00000454354 PLEKHG6Q3KR16 790 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 C5orf22Q49AR2 442 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 WDR45BQ5MNZ6 344 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 RABGAP1LQ5R372 815 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 FKBP15Q5T1M5 1219 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 SYCP2LQ5T4T6 812 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 CCDC183Q5T5S1 534 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 DAB2IPQ5VWQ8 1189 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 MMS22LQ6ZRQ5 1243 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 DEFB119Q8N690 84 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 DNASE2BQ8WZ79 361 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 C18orf8Q96DM3 657 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 NUP58Q9BVL2 599 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 PCED1AQ9H1Q7 454 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 PDCL3Q9H2J4 239 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 TMEM51Q9NW97 253 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.44□□□□□ -0.42
USP40-210ENST00000454354 COX16Q9P0S2 106 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 KIAA1522Q9P206 1035 aaPredicted RBP12.44□□□□□ -0.42
USP40-210ENST00000454354 SUSD2Q9UGT4 822 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 SLC6A14Q9UN76 642 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 ERVW-1Q9UQF0 538 aa12.44□□□□□ -0.42
USP40-210ENST00000454354 KMT2BQ9UMN6 2715 aaPredicted RBP12.44□□□□□ -0.42
USP40-210ENST00000454354 LGALS16A8MUM7 142 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms