RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 CEP83Q9Y592 693 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 TMEM131Q92545 1883 aa7.34□□□□□ -1.23
VPS41-208ENST00000448833 NYNRINQ9P2P1 1898 aaKnown RBP7.33□□□□□ -1.24
VPS41-208ENST00000448833 LRRC72A6NJI9 287 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 FLRT2O43155 660 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 MSI1O43347 362 aaKnown RBP7.33□□□□□ -1.24
VPS41-208ENST00000448833 GJB3O75712 270 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 KRT37O76014 449 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 LETM1O95202 739 aaPredicted RBP7.33□□□□□ -1.24
VPS41-208ENST00000448833 SEMA4FO95754 770 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 CDK4P11802 303 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 ABCB4P21439 1286 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 BRD2P25440 801 aaKnown RBP7.33□□□□□ -1.24
VPS41-208ENST00000448833 CD27P26842 260 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 MAOBP27338 520 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 GNA15P30679 374 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 NUDT1P36639 197 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 GRIA4P48058 902 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 BPIFB4P59827 614 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 CDK17Q00537 523 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 ECT2LQ008S8 904 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 PTK2Q05397 1052 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 CCDC15Q0P6D6 951 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 GRIK2Q13002 908 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 TPD52L1Q16890 204 aaPredicted RBP7.33□□□□□ -1.24
VPS41-208ENST00000448833 FAM133BQ5BKY9 247 aaKnown RBP7.33□□□□□ -1.24
VPS41-208ENST00000448833 MS4A13Q5J8X5 152 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 RABGAP1LQ5R372 815 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 GBP6Q6ZN66 633 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 ADAT2Q7Z6V5 191 aaKnown RBP7.33□□□□□ -1.24
VPS41-208ENST00000448833 DSG4Q86SJ6 1040 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 ZDHHC17Q8IUH5 632 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 FAM114A1Q8IWE2 563 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 PLPP6Q8IY26 295 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 ZCCHC9Q8N567 271 aaKnown RBP7.33□□□□□ -1.24
VPS41-208ENST00000448833 MLKLQ8NB16 471 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 GANCQ8TET4 914 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 SETD7Q8WTS6 366 aaKnown RBP7.33□□□□□ -1.24
VPS41-208ENST00000448833 ZNF606Q8WXB4 792 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 SORCS1Q8WY21 1168 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 ERCC4Q92889 916 aaPredicted RBP7.33□□□□□ -1.24
VPS41-208ENST00000448833 OMDQ99983 421 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 SLC4A5Q9BY07 1137 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 INTS2Q9H0H0 1204 aaKnown RBP7.33□□□□□ -1.24
VPS41-208ENST00000448833 RSPH9Q9H1X1 276 aaPredicted RBP7.33□□□□□ -1.24
VPS41-208ENST00000448833 PRSS16Q9NQE7 514 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 TM7SF3Q9NS93 570 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 RRN3Q9NYV6 651 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 STIM2Q9P246 746 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 EIF2B4Q9UI10 523 aaKnown RBP7.33□□□□□ -1.24
VPS41-208ENST00000448833 RWDD2AQ9UIY3 292 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 FZD4Q9ULV1 537 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 CLEC4EQ9ULY5 219 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 CTNND2Q9UQB3 1225 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.33□□□□□ -1.24
VPS41-208ENST00000448833 PAXBP1Q9Y5B6 917 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 PTPRBP23467 1997 aa7.33□□□□□ -1.24
VPS41-208ENST00000448833 CFAP47Q6ZTR5 3102 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 DMXL2Q8TDJ6 3036 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 EDDM13A0A1B0GTR0 161 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 SPAARA0A1B0GVQ0 90 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 KCNU1A8MYU2 1149 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 F5H5T6 163 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 PIK3R2O00459 728 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 YKT6O15498 198 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 THAP12O43422 761 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 SH3BP5O60239 455 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 MAGEC1O60732 1142 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 HSF2BPO75031 334 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 LUC7L3O95232 432 aaKnown RBP7.32□□□□□ -1.24
VPS41-208ENST00000448833 TRUB2O95900 331 aaKnown RBP7.32□□□□□ -1.24
VPS41-208ENST00000448833 ADH1BP00325 375 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 C5AR1P21730 350 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 SLC6A4P31645 630 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 CCR1P32246 355 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 ACSL1P33121 698 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 KRT9P35527 623 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 USP8P40818 1118 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 CSKP41240 450 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 UBE2HP62256 183 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 RPS14P62263 151 aaKnown RBP7.32□□□□□ -1.24
VPS41-208ENST00000448833 RACK1P63244 317 aaKnown RBP7.32□□□□□ -1.24
VPS41-208ENST00000448833 NUMA1Q14980 2115 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 PTPRNQ16849 979 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 EXOC3L4Q17RC7 722 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 HLA-BQ31612 363 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 HNRNPA1L2Q32P51 320 aaKnown RBP7.32□□□□□ -1.24
VPS41-208ENST00000448833 SLC45A4Q5BKX6 768 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 RFWD3Q6PCD5 774 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 TRIM65Q6PJ69 517 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 DBX2Q6ZNG2 339 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 SND1Q7KZF4 910 aaKnown RBP eCLIP7.32□□□□□ -1.24
VPS41-208ENST00000448833 RAB44Q7Z6P3 723 aaPredicted RBP7.32□□□□□ -1.24
VPS41-208ENST00000448833 FAM124AQ86V42 546 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 CREBRFQ8IUR6 639 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 GALNT15Q8N3T1 639 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 CARNMT1Q8N4J0 409 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 C1orf216Q8TAB5 229 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 DQX1Q8TE96 717 aaKnown RBP7.32□□□□□ -1.24
VPS41-208ENST00000448833 RHBDD1Q8TEB9 315 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms