RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 KCTD15Q96SI1 283 aaPredicted RBP12.17□□□□□ -0.46
MSH6-204ENST00000445503 APBA2Q99767 749 aa12.17□□□□□ -0.46
MSH6-204ENST00000445503 ZNF670Q9BS34 389 aa12.17□□□□□ -0.46
MSH6-204ENST00000445503 COG4Q9H9E3 785 aa12.17□□□□□ -0.46
MSH6-204ENST00000445503 IL1RL2Q9HB29 575 aa12.17□□□□□ -0.46
MSH6-204ENST00000445503 SNX15Q9NRS6 342 aa12.17□□□□□ -0.46
MSH6-204ENST00000445503 SETD4Q9NVD3 440 aa12.17□□□□□ -0.46
MSH6-204ENST00000445503 DDIT4Q9NX09 232 aa12.17□□□□□ -0.46
MSH6-204ENST00000445503 MID2Q9UJV3 735 aa12.17□□□□□ -0.46
MSH6-204ENST00000445503 CLDN5O00501 218 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 PPEF2O14830 753 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 SLC4A1P02730 911 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 BAG6P46379 1132 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 SERPINB8P50452 374 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 PGGT1BP53609 377 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 SEL1L3Q68CR1 1132 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 ZNF772Q68DY9 489 aaPredicted RBP12.16□□□□□ -0.46
MSH6-204ENST00000445503 MTMR14Q8NCE2 650 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 RNF139Q8WU17 664 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 EDEM1Q92611 657 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 CERS2Q96G23 380 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 ATXN3LQ9H3M9 355 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 CYLDQ9NQC7 956 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 IRAK4Q9NWZ3 460 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 ZNF180Q9UJW8 692 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 BCLAF3A2AJT9 711 aaKnown RBP12.16□□□□□ -0.46
MSH6-204ENST00000445503 BIRC5O15392 142 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 MFSD11O43934 449 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 TRIM13O60858 407 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 IREB2P48200 963 aaKnown RBP12.16□□□□□ -0.46
MSH6-204ENST00000445503 BCAT1P54687 386 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 AQP4P55087 323 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 MBTD1Q05BQ5 628 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 BST2Q10589 180 aaKnown RBP12.16□□□□□ -0.46
MSH6-204ENST00000445503 PCSK7Q16549 785 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 ARL13BQ3SXY8 428 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 MFN1Q8IWA4 741 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 HDAC11Q96DB2 347 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 KLRG1Q96E93 195 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 OMDQ99983 421 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 KRT82Q9NSB4 513 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 TUBGCP4Q9UGJ1 667 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 SBF2Q86WG5 1849 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 XPOTO43592 962 aaKnown RBP12.16□□□□□ -0.46
MSH6-204ENST00000445503 PMPCBO75439 489 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 PIGNO95427 931 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 THRAP10827 490 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 CDH5P33151 784 aaPredicted RBP12.16□□□□□ -0.46
MSH6-204ENST00000445503 IDH3AP50213 366 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 HDAC4P56524 1084 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 MAP3K7CLP57077 242 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 GRM1Q13255 1194 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 LAMB3Q13751 1172 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 BNC2Q6ZN30 1099 aaPredicted RBP12.16□□□□□ -0.46
MSH6-204ENST00000445503 TTC30AQ86WT1 665 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 KBTBD2Q8IY47 623 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 PHTF2Q8N3S3 785 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 ELMO2Q96JJ3 720 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 SIGLEC10Q96LC7 697 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 PLEKHA5Q9HAU0 1116 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 NMRAL1Q9HBL8 299 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 CHST12Q9NRB3 414 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 DTLQ9NZJ0 730 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 NRAPQ86VF7 1730 aa12.16□□□□□ -0.46
MSH6-204ENST00000445503 F8W8V4 182 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 IRF6O14896 467 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 SEC24DO94855 1032 aaPredicted RBP12.15□□□□□ -0.46
MSH6-204ENST00000445503 ICAM3P32942 547 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 CCNA1P78396 465 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 CYLC2Q14093 348 aaPredicted RBP12.15□□□□□ -0.46
MSH6-204ENST00000445503 POU6F1Q14863 301 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 PDK3Q15120 406 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 CERCAMQ5T4B2 595 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 CWF19L1Q69YN2 538 aaKnown RBP12.15□□□□□ -0.46
MSH6-204ENST00000445503 LRRC8EQ6NSJ5 796 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 ADGRF2Q8IZF7 708 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 ZNF781Q8N8C0 355 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 TNIP3Q96KP6 325 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 FSD1LQ9BXM9 530 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 C20orf27Q9GZN8 174 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 FZD8Q9H461 694 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 GOLGA2P5Q9HBQ8 144 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 CDH22Q9UJ99 828 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 CDYLQ9Y232 598 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 CDK5RAP2Q96SN8 1893 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 TPST1O60507 370 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 CLPTM1O96005 669 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 NELFEP18615 380 aaKnown RBP12.15□□□□□ -0.46
MSH6-204ENST00000445503 MPSTP25325 297 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 PMLP29590 882 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 CCNG1P51959 295 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 NME5P56597 212 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 TARBP2Q15633 366 aaKnown RBP12.15□□□□□ -0.46
MSH6-204ENST00000445503 CDCA2Q69YH5 1023 aaPredicted RBP12.15□□□□□ -0.46
MSH6-204ENST00000445503 POTEAQ6S8J7 498 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 C16orf89Q6UX73 402 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 ILDR2Q71H61 639 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 PCDH20Q8N6Y1 951 aaKnown RBP12.15□□□□□ -0.46
MSH6-204ENST00000445503 KYQ8NBH2 561 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 AGAP2Q99490 1192 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms