RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 MBD3O95983 291 aa20.54■□□□□ 0.88
SHROOM1-204ENST00000440118 IGLV3-25P01717 112 aa20.54■□□□□ 0.88
SHROOM1-204ENST00000440118 ASLP04424 464 aa20.54■□□□□ 0.88
SHROOM1-204ENST00000440118 GNSP15586 552 aa20.54■□□□□ 0.88
SHROOM1-204ENST00000440118 CSKP41240 450 aa20.54■□□□□ 0.88
SHROOM1-204ENST00000440118 PITX1P78337 314 aaPredicted RBP20.54■□□□□ 0.88
SHROOM1-204ENST00000440118 SLC6A3Q01959 620 aa20.54■□□□□ 0.88
SHROOM1-204ENST00000440118 KCNMA1Q12791 1236 aa20.54■□□□□ 0.88
SHROOM1-204ENST00000440118 KRT31Q15323 416 aa20.54■□□□□ 0.88
SHROOM1-204ENST00000440118 TTC31Q49AM3 519 aaPredicted RBP20.54■□□□□ 0.88
SHROOM1-204ENST00000440118 OLFML1Q6UWY5 402 aa20.54■□□□□ 0.88
SHROOM1-204ENST00000440118 METTL3Q86U44 580 aaKnown RBP20.54■□□□□ 0.88
SHROOM1-204ENST00000440118 ZDHHC17Q8IUH5 632 aa20.54■□□□□ 0.88
SHROOM1-204ENST00000440118 KIAA1522Q9P206 1035 aaPredicted RBP20.54■□□□□ 0.88
SHROOM1-204ENST00000440118 USP36Q9P275 1121 aaKnown RBP20.54■□□□□ 0.88
SHROOM1-204ENST00000440118 STAP1Q9ULZ2 295 aa20.54■□□□□ 0.88
SHROOM1-204ENST00000440118 SLC6A14Q9UN76 642 aa20.54■□□□□ 0.88
SHROOM1-204ENST00000440118 F8VZ95 297 aa20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 DNTTP04053 509 aa20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 ENGP17813 658 aa20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 NOVA1P51513 510 aaKnown RBP20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 COPAP53621 1224 aa20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 RNASE9P60153 205 aaKnown RBP20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 MTA1Q13330 715 aa20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 CAMK2GQ13555 558 aaPredicted RBP20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 PTPRNQ16849 979 aa20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 TTC39BQ5VTQ0 682 aaPredicted RBP20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 SLC23A3Q6PIS1 610 aa20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 SND1Q7KZF4 910 aaKnown RBP eCLIP20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 SLC26A9Q7LBE3 791 aa20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 KIAA0907Q7Z7F0 614 aaPredicted RBP20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 SLC41A1Q8IVJ1 513 aa20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 SNX19Q92543 992 aa20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 MYEOVQ96EZ4 313 aa20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 NUP58Q9BVL2 599 aa20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 STK33Q9BYT3 514 aa20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 MIR1-1HGQ9H1L0 117 aa20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 TMEM245Q9H330 911 aa20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 ITM2CQ9NQX7 267 aa20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 FAM207AQ9NSI2 230 aaPredicted RBP20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 SUN2Q9UH99 717 aa20.53■□□□□ 0.88
SHROOM1-204ENST00000440118 ASCC3Q8N3C0 2202 aaKnown RBP20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 M0QYT0 321 aa20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 ADRB1P08588 477 aa20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 SERPINF2P08697 491 aa20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 PLEKHG6Q3KR16 790 aa20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 PITRM1Q5JRX3 1037 aa20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 CCDC183Q5T5S1 534 aa20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 FAM102AQ5T9C2 384 aaPredicted RBP20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 PEAR1Q5VY43 1037 aaPredicted RBP20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 PSAPL1Q6NUJ1 521 aa20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 LRSAM1Q6UWE0 723 aa20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 RBM43Q6ZSC3 357 aaKnown RBP20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 ERICH1Q86X53 443 aa20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 HDDC3Q8N4P3 179 aa20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 GANCQ8TET4 914 aa20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 ZNF419Q96HQ0 510 aaPredicted RBP20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 RPRD1AQ96P16 312 aaPredicted RBP20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 SPAG5Q96R06 1193 aa20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 FANCLQ9NW38 375 aa20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 WSB2Q9NYS7 404 aaPredicted RBP20.52■□□□□ 0.88
SHROOM1-204ENST00000440118 RNASEH1O60930 286 aaKnown RBP20.51■□□□□ 0.87
SHROOM1-204ENST00000440118 LSM8O95777 96 aaKnown RBP20.51■□□□□ 0.87
SHROOM1-204ENST00000440118 NOS2P35228 1153 aa20.51■□□□□ 0.87
SHROOM1-204ENST00000440118 SULT1E1P49888 294 aa20.51■□□□□ 0.87
SHROOM1-204ENST00000440118 MYL5Q02045 173 aa20.51■□□□□ 0.87
SHROOM1-204ENST00000440118 CDKAL1Q5VV42 579 aa20.51■□□□□ 0.87
SHROOM1-204ENST00000440118 ZNF776Q68DI1 518 aaPredicted RBP20.51■□□□□ 0.87
SHROOM1-204ENST00000440118 MMS22LQ6ZRQ5 1243 aa20.51■□□□□ 0.87
SHROOM1-204ENST00000440118 CIR1Q86X95 450 aaPredicted RBP20.51■□□□□ 0.87
SHROOM1-204ENST00000440118 C18orf8Q96DM3 657 aa20.51■□□□□ 0.87
SHROOM1-204ENST00000440118 PRSS16Q9NQE7 514 aa20.51■□□□□ 0.87
SHROOM1-204ENST00000440118 FSCN3Q9NQT6 498 aa20.51■□□□□ 0.87
SHROOM1-204ENST00000440118 RRN3Q9NYV6 651 aa20.51■□□□□ 0.87
SHROOM1-204ENST00000440118 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.51■□□□□ 0.874e-7■■■□□ 17.2
SHROOM1-204ENST00000440118 PAXBP1Q9Y5B6 917 aa20.51■□□□□ 0.87
SHROOM1-204ENST00000440118 NUMA1Q14980 2115 aa20.51■□□□□ 0.87
SHROOM1-204ENST00000440118 CACNA1EQ15878 2313 aa20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 A0A1B0GVM2 712 aa20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 TCAF2A6NFQ2 919 aa20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 GOLGA8SH3BPF8 625 aa20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 GFPT2O94808 682 aa20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 KCNK5O95279 499 aa20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 SYPP08247 313 aa20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 PDGFRAP16234 1089 aa20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 CDK11BP21127 795 aaKnown RBP20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 NNMTP40261 264 aa20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 MATKP42679 507 aa20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 POLR2FP61218 127 aaKnown RBP20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 FSCBQ5H9T9 825 aa20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 DCAF12L1Q5VU92 463 aa20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 NOP9Q86U38 636 aaKnown RBP20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 ZCCHC9Q8N567 271 aaKnown RBP20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 ZNF397Q8NF99 534 aaPredicted RBP20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 CADM4Q8NFZ8 388 aa20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 TTC17Q96AE7 1141 aa20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 NAA15Q9BXJ9 866 aaKnown RBP20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 NLRC4Q9NPP4 1024 aa20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 VANGL2Q9ULK5 521 aa20.5■□□□□ 0.87
SHROOM1-204ENST00000440118 ERVW-1Q9UQF0 538 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms