RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 BORAQ6PGQ7 559 aa8.8□□□□□ -1
HPS4-206ENST00000439453 IYDQ6PHW0 289 aa8.8□□□□□ -1
HPS4-206ENST00000439453 RFX6Q8HWS3 928 aa8.8□□□□□ -1
HPS4-206ENST00000439453 NUP93Q8N1F7 819 aa8.8□□□□□ -1
HPS4-206ENST00000439453 LRRC43Q8N309 656 aa8.8□□□□□ -1
HPS4-206ENST00000439453 DDI1Q8WTU0 396 aa8.8□□□□□ -1
HPS4-206ENST00000439453 TFB1MQ8WVM0 346 aaKnown RBP8.8□□□□□ -1
HPS4-206ENST00000439453 TRIM43Q96BQ3 446 aaPredicted RBP8.8□□□□□ -1
HPS4-206ENST00000439453 CMTM5Q96DZ9 223 aa8.8□□□□□ -1
HPS4-206ENST00000439453 MRPL1Q9BYD6 325 aaKnown RBP8.8□□□□□ -1
HPS4-206ENST00000439453 AP5M1Q9H0R1 490 aa8.8□□□□□ -1
HPS4-206ENST00000439453 PDLIM7Q9NR12 457 aa8.8□□□□□ -1
HPS4-206ENST00000439453 SMYD2Q9NRG4 433 aa8.8□□□□□ -1
HPS4-206ENST00000439453 SLC9A2Q9UBY0 812 aa8.8□□□□□ -1
HPS4-206ENST00000439453 CNTN6Q9UQ52 1028 aa8.8□□□□□ -1
HPS4-206ENST00000439453 AP4B1Q9Y6B7 739 aa8.8□□□□□ -1
HPS4-206ENST00000439453 MYOCOSA0A1B0GUC4 107 aa8.79□□□□□ -1
HPS4-206ENST00000439453 MCF2LO15068 1137 aa8.79□□□□□ -1
HPS4-206ENST00000439453 MAFGO15525 162 aa8.79□□□□□ -1
HPS4-206ENST00000439453 KRT38O76015 456 aa8.79□□□□□ -1
HPS4-206ENST00000439453 SRGAP2CP0DJJ0 459 aa8.79□□□□□ -1
HPS4-206ENST00000439453 SRGAP2BP0DMP2 458 aa8.79□□□□□ -1
HPS4-206ENST00000439453 IL1R2P27930 398 aa8.79□□□□□ -1
HPS4-206ENST00000439453 HDAC4P56524 1084 aa8.79□□□□□ -1
HPS4-206ENST00000439453 YWHAZP63104 245 aaKnown RBP8.79□□□□□ -1
HPS4-206ENST00000439453 COG7P83436 770 aa8.79□□□□□ -1
HPS4-206ENST00000439453 SLC25A11Q02978 314 aaKnown RBP8.79□□□□□ -1
HPS4-206ENST00000439453 PPIDQ08752 370 aaKnown RBP8.79□□□□□ -1
HPS4-206ENST00000439453 CBX3Q13185 183 aa8.79□□□□□ -1
HPS4-206ENST00000439453 PEX6Q13608 980 aa8.79□□□□□ -1
HPS4-206ENST00000439453 APOFQ13790 326 aa8.79□□□□□ -1
HPS4-206ENST00000439453 GK3PQ14409 553 aa8.79□□□□□ -1
HPS4-206ENST00000439453 PSMD6Q15008 389 aa8.79□□□□□ -1
HPS4-206ENST00000439453 FASTKD1Q53R41 847 aaKnown RBP8.79□□□□□ -1
HPS4-206ENST00000439453 TEDDM1Q5T9Z0 273 aa8.79□□□□□ -1
HPS4-206ENST00000439453 RSPH3Q86UC2 560 aa8.79□□□□□ -1
HPS4-206ENST00000439453 ZNF410Q86VK4 478 aa8.79□□□□□ -1
HPS4-206ENST00000439453 TRIM50Q86XT4 487 aa8.79□□□□□ -1
HPS4-206ENST00000439453 C4orf19Q8IY42 314 aa8.79□□□□□ -1
HPS4-206ENST00000439453 THNSL1Q8IYQ7 743 aa8.79□□□□□ -1
HPS4-206ENST00000439453 GFM2Q969S9 779 aaKnown RBP8.79□□□□□ -1
HPS4-206ENST00000439453 FAF2Q96CS3 445 aa8.79□□□□□ -1
HPS4-206ENST00000439453 SPATA33Q96N06 139 aa8.79□□□□□ -1
HPS4-206ENST00000439453 PRPF18Q99633 342 aaKnown RBP8.79□□□□□ -1
HPS4-206ENST00000439453 THEGQ9P2T0 379 aa8.79□□□□□ -1
HPS4-206ENST00000439453 ZC3H7BQ9UGR2 993 aaKnown RBP8.79□□□□□ -1
HPS4-206ENST00000439453 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.79□□□□□ -1
HPS4-206ENST00000439453 LOC100653049A0A140TA62 436 aa8.79□□□□□ -1
HPS4-206ENST00000439453 ARVCFO00192 962 aa8.79□□□□□ -1
HPS4-206ENST00000439453 TRDMT1O14717 391 aaKnown RBP8.79□□□□□ -1
HPS4-206ENST00000439453 EXTL3O43909 919 aa8.79□□□□□ -1
HPS4-206ENST00000439453 KRT34O76011 436 aa8.79□□□□□ -1
HPS4-206ENST00000439453 TOP3BO95985 862 aaKnown RBP8.79□□□□□ -1
HPS4-206ENST00000439453 LGALS2P05162 132 aa8.79□□□□□ -1
HPS4-206ENST00000439453 KRT7P08729 469 aa8.79□□□□□ -1
HPS4-206ENST00000439453 PRKCHP24723 683 aa8.79□□□□□ -1
HPS4-206ENST00000439453 PSMA2P25787 234 aa8.79□□□□□ -1
HPS4-206ENST00000439453 TAZQ16635 292 aa8.79□□□□□ -1
HPS4-206ENST00000439453 C1QTNF12Q5T7M4 302 aa8.79□□□□□ -1
HPS4-206ENST00000439453 PDPK2PQ6A1A2 396 aa8.79□□□□□ -1
HPS4-206ENST00000439453 ZNF513Q8N8E2 541 aaPredicted RBP8.79□□□□□ -1
HPS4-206ENST00000439453 ZBTB8BQ8NAP8 495 aaPredicted RBP8.79□□□□□ -1
HPS4-206ENST00000439453 PRPF31Q8WWY3 499 aaKnown RBP8.79□□□□□ -1
HPS4-206ENST00000439453 PHF12Q96QT6 1004 aa8.79□□□□□ -1
HPS4-206ENST00000439453 KCNK16Q96T55 309 aa8.79□□□□□ -1
HPS4-206ENST00000439453 IFT122Q9HBG6 1241 aa8.79□□□□□ -1
HPS4-206ENST00000439453 NUB1Q9Y5A7 615 aa8.79□□□□□ -1
HPS4-206ENST00000439453 PTPRJQ12913 1337 aa8.79□□□□□ -1
HPS4-206ENST00000439453 MICAL3Q7RTP6 2002 aa8.79□□□□□ -1
HPS4-206ENST00000439453 H3BSA7 217 aa8.79□□□□□ -1
HPS4-206ENST00000439453 CHADO15335 359 aa8.79□□□□□ -1
HPS4-206ENST00000439453 B4GALT4O60513 344 aa8.79□□□□□ -1
HPS4-206ENST00000439453 SLC1A6P48664 564 aa8.79□□□□□ -1
HPS4-206ENST00000439453 IDH3AP50213 366 aa8.79□□□□□ -1
HPS4-206ENST00000439453 NR1H2P55055 460 aa8.79□□□□□ -1
HPS4-206ENST00000439453 MTTPP55157 894 aa8.79□□□□□ -1
HPS4-206ENST00000439453 ADAM17P78536 824 aa8.79□□□□□ -1
HPS4-206ENST00000439453 ITGA7Q13683 1181 aa8.79□□□□□ -1
HPS4-206ENST00000439453 CYP4A22Q5TCH4 519 aa8.79□□□□□ -1
HPS4-206ENST00000439453 MROH9Q5TGP6 573 aa8.79□□□□□ -1
HPS4-206ENST00000439453 KLHL35Q6PF15 583 aa8.79□□□□□ -1
HPS4-206ENST00000439453 DARS2Q6PI48 645 aaKnown RBP8.79□□□□□ -1
HPS4-206ENST00000439453 PAOXQ6QHF9 649 aa8.79□□□□□ -1
HPS4-206ENST00000439453 FRMD7Q6ZUT3 714 aa8.79□□□□□ -1
HPS4-206ENST00000439453 MAVSQ7Z434 540 aa8.79□□□□□ -1
HPS4-206ENST00000439453 RNF168Q8IYW5 571 aaPredicted RBP8.79□□□□□ -1
HPS4-206ENST00000439453 ADGRF2Q8IZF7 708 aa8.79□□□□□ -1
HPS4-206ENST00000439453 ARFGAP1Q8N6T3 406 aa8.79□□□□□ -1
HPS4-206ENST00000439453 WNT8BQ93098 351 aa8.79□□□□□ -1
HPS4-206ENST00000439453 POPDC2Q9HBU9 364 aa8.79□□□□□ -1
HPS4-206ENST00000439453 STARD7Q9NQZ5 370 aa8.79□□□□□ -1
HPS4-206ENST00000439453 TBX21Q9UL17 535 aa8.79□□□□□ -1
HPS4-206ENST00000439453 SH3GLB1Q9Y371 365 aa8.79□□□□□ -1
HPS4-206ENST00000439453 CEPT1Q9Y6K0 416 aa8.79□□□□□ -1
HPS4-206ENST00000439453 APOC4-APOC2K7ER74 178 aa8.78□□□□□ -1
HPS4-206ENST00000439453 FAM189A1O60320 539 aa8.78□□□□□ -1
HPS4-206ENST00000439453 ZMPSTE24O75844 475 aa8.78□□□□□ -1
HPS4-206ENST00000439453 APOC2P02655 101 aa8.78□□□□□ -1
HPS4-206ENST00000439453 MYL3P08590 195 aa8.78□□□□□ -1
HPS4-206ENST00000439453 FAM58BPP0C7Q3 252 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms