RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 FUT11Q495W5 492 aa15.7■□□□□ 0.1
LIMS3-201ENST00000437679 OTUD1Q5VV17 481 aaPredicted RBP15.7■□□□□ 0.1
LIMS3-201ENST00000437679 PHLDB2Q86SQ0 1253 aa15.7■□□□□ 0.1
LIMS3-201ENST00000437679 RPRD1AQ96P16 312 aaPredicted RBP15.7■□□□□ 0.1
LIMS3-201ENST00000437679 TKTL2Q9H0I9 626 aa15.7■□□□□ 0.1
LIMS3-201ENST00000437679 ARRDC1-AS1Q9H2J1 176 aa15.7■□□□□ 0.1
LIMS3-201ENST00000437679 CD248Q9HCU0 757 aa15.7■□□□□ 0.1
LIMS3-201ENST00000437679 PARD6AQ9NPB6 346 aa15.7■□□□□ 0.1
LIMS3-201ENST00000437679 ARHGEF38Q9NXL2 777 aa15.7■□□□□ 0.1
LIMS3-201ENST00000437679 ADAM22Q9P0K1 906 aa15.7■□□□□ 0.1
LIMS3-201ENST00000437679 PCDHGA5Q9Y5G8 931 aa15.7■□□□□ 0.1
LIMS3-201ENST00000437679 CEP250Q9BV73 2442 aa15.7■□□□□ 0.1
LIMS3-201ENST00000437679 CKAP5Q14008 2032 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 A0A1B0GVM2 712 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 TCAF2A6NFQ2 919 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 FOXD2O60548 495 aaPredicted RBP15.69■□□□□ 0.1
LIMS3-201ENST00000437679 ADCY5O95622 1261 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 ASLP04424 464 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 EPHX1P07099 455 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 BCKDHBP21953 392 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 TGM1P22735 817 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 PRKCHP24723 683 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 RDXP35241 583 aaKnown RBP15.69■□□□□ 0.1
LIMS3-201ENST00000437679 CSKP41240 450 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 OXCT1P55809 520 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 ST8SIA6P61647 398 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 LMNB2Q03252 620 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 ASIC2Q16515 512 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 CSRP2Q16527 193 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 PMS2CLQ68D20 193 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 FBXL22Q6P050 247 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 KIAA1324Q6UXG2 1013 aaKnown RBP15.69■□□□□ 0.1
LIMS3-201ENST00000437679 LPCAT2Q7L5N7 544 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 IRF2BP2Q7Z5L9 587 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 PHF13Q86YI8 300 aaPredicted RBP15.69■□□□□ 0.1
LIMS3-201ENST00000437679 BAP1Q92560 729 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 TTC17Q96AE7 1141 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 LMLNQ96KR4 655 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 MRGPRX1Q96LB2 322 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 CFAP57Q96MR6 1250 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 EDEM3Q9BZQ6 932 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 SIK2Q9H0K1 926 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 SEMA4GQ9NTN9 838 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 VANGL2Q9ULK5 521 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 HS3ST4Q9Y661 456 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 GON4LQ3T8J9 2241 aa15.69■□□□□ 0.1
LIMS3-201ENST00000437679 PLXND1Q9Y4D7 1925 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 LRRC53A6NM62 1247 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 HLA-EP13747 358 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 PDGFRAP16234 1089 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 TNFAIP3P21580 790 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 SDC4P31431 198 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 DHPSP49366 369 aaPredicted RBP15.68■□□□□ 0.1
LIMS3-201ENST00000437679 UBASH3AP57075 661 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 CREB5Q02930 508 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 SLC12A1Q13621 1099 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 PTPRNQ16849 979 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 FSCBQ5H9T9 825 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 PITRM1Q5JRX3 1037 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 ACBD5Q5T8D3 534 aaPredicted RBP15.68■□□□□ 0.1
LIMS3-201ENST00000437679 SFMBT2Q5VUG0 894 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 TRNP1Q6NT89 227 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 PPP1R2P3Q6NXS1 205 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 SLC36A4Q6YBV0 504 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 CIR1Q86X95 450 aaPredicted RBP15.68■□□□□ 0.1
LIMS3-201ENST00000437679 CCAR2Q8N163 923 aaKnown RBP15.68■□□□□ 0.1
LIMS3-201ENST00000437679 EMC1Q8N766 993 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 RXFP2Q8WXD0 754 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 PPP1R9BQ96SB3 815 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 SELENOOQ9BVL4 669 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 ADAM33Q9BZ11 813 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 SLC6A17Q9H1V8 727 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 TMEM245Q9H330 911 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 PRDM16Q9HAZ2 1276 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 SUN2Q9UH99 717 aa15.68■□□□□ 0.1
LIMS3-201ENST00000437679 MBD1Q9UIS9 605 aaPredicted RBP15.68■□□□□ 0.1
LIMS3-201ENST00000437679 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.67■□□□□ 0.1
LIMS3-201ENST00000437679 PRR5-ARHGAP8B1AHC4 643 aa15.67■□□□□ 0.1
LIMS3-201ENST00000437679 KRT3P12035 628 aa15.67■□□□□ 0.1
LIMS3-201ENST00000437679 GGCXP38435 758 aa15.67■□□□□ 0.1
LIMS3-201ENST00000437679 MPLP40238 635 aa15.67■□□□□ 0.1
LIMS3-201ENST00000437679 ATXN1P54253 815 aaKnown RBP15.67■□□□□ 0.1
LIMS3-201ENST00000437679 GSCP56915 257 aaPredicted RBP15.67■□□□□ 0.1
LIMS3-201ENST00000437679 ARHGAP8P85298 464 aa15.67■□□□□ 0.1
LIMS3-201ENST00000437679 ATP11AP98196 1134 aa15.67■□□□□ 0.1
LIMS3-201ENST00000437679 C1QBPQ07021 282 aaKnown RBP15.67■□□□□ 0.1
LIMS3-201ENST00000437679 PTP4A2Q12974 167 aa15.67■□□□□ 0.1
LIMS3-201ENST00000437679 ZNF177Q13360 481 aaPredicted RBP15.67■□□□□ 0.1
LIMS3-201ENST00000437679 LRRC31Q6UY01 552 aa15.67■□□□□ 0.1
LIMS3-201ENST00000437679 PRR23CQ6ZRP0 262 aa15.67■□□□□ 0.1
LIMS3-201ENST00000437679 TMPRSS6Q8IU80 811 aa15.67■□□□□ 0.1
LIMS3-201ENST00000437679 FRMD1Q8N878 549 aa15.67■□□□□ 0.1
LIMS3-201ENST00000437679 PRCCQ92733 491 aaPredicted RBP15.67■□□□□ 0.1
LIMS3-201ENST00000437679 IGSF8Q969P0 613 aa15.67■□□□□ 0.1
LIMS3-201ENST00000437679 SIPA1Q96FS4 1042 aa15.67■□□□□ 0.1
LIMS3-201ENST00000437679 NUP58Q9BVL2 599 aa15.67■□□□□ 0.1
LIMS3-201ENST00000437679 AIPL1Q9NZN9 384 aa15.67■□□□□ 0.1
LIMS3-201ENST00000437679 INTS6Q9UL03 887 aaKnown RBP15.67■□□□□ 0.1
LIMS3-201ENST00000437679 CYP8B1Q9UNU6 501 aa15.67■□□□□ 0.1
LIMS3-201ENST00000437679 NUP205Q92621 2012 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms