RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 TMEM92Q6UXU6 159 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 STRADAQ7RTN6 431 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 TSTD1Q8NFU3 115 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 FIBINQ8TAL6 211 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 KCNV2Q8TDN2 545 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 ISCUQ9H1K1 167 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 ABHD10Q9NUJ1 306 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 MUC6Q6W4X9 2439 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 WASH3PC4AMC7 463 aa19.26■□□□□ 0.67
SHH-203ENST00000435425 SRGAP2O75044 1071 aa19.26■□□□□ 0.67
SHH-203ENST00000435425 APBB3O95704 486 aa19.26■□□□□ 0.67
SHH-203ENST00000435425 HOXB2P14652 356 aa19.26■□□□□ 0.67
SHH-203ENST00000435425 HNRNPLP14866 589 aaKnown RBP eCLIP19.26■□□□□ 0.67
SHH-203ENST00000435425 HNRNPH3P31942 346 aaKnown RBP19.26■□□□□ 0.67
SHH-203ENST00000435425 NBL1P41271 181 aa19.26■□□□□ 0.67
SHH-203ENST00000435425 ZNF75DP51815 510 aa19.26■□□□□ 0.67
SHH-203ENST00000435425 ZNF143P52747 638 aaPredicted RBP19.26■□□□□ 0.67
SHH-203ENST00000435425 HDAC4P56524 1084 aa19.26■□□□□ 0.67
SHH-203ENST00000435425 OGDHQ02218 1023 aa19.26■□□□□ 0.67
SHH-203ENST00000435425 ARL13BQ3SXY8 428 aa19.26■□□□□ 0.67
SHH-203ENST00000435425 MBLAC2Q68D91 279 aa19.26■□□□□ 0.67
SHH-203ENST00000435425 PLEKHA7Q6IQ23 1121 aa19.26■□□□□ 0.67
SHH-203ENST00000435425 AHI1Q8N157 1196 aa19.26■□□□□ 0.67
SHH-203ENST00000435425 CCAR2Q8N163 923 aaKnown RBP19.26■□□□□ 0.67
SHH-203ENST00000435425 WFIKKN2Q8TEU8 576 aa19.26■□□□□ 0.67
SHH-203ENST00000435425 CYB5D2Q8WUJ1 264 aa19.26■□□□□ 0.67
SHH-203ENST00000435425 TRIM11Q96F44 468 aa19.26■□□□□ 0.67
SHH-203ENST00000435425 DNAJC7Q99615 494 aa19.26■□□□□ 0.67
SHH-203ENST00000435425 FAM126AQ9BYI3 521 aaPredicted RBP19.26■□□□□ 0.67
SHH-203ENST00000435425 DEF6Q9H4E7 631 aa19.26■□□□□ 0.67
SHH-203ENST00000435425 TMEM51Q9NW97 253 aa19.26■□□□□ 0.67
SHH-203ENST00000435425 RAD54BQ9Y620 910 aa19.26■□□□□ 0.67
SHH-203ENST00000435425 EML5Q05BV3 1969 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 AKR1B15C9JRZ8 316 aaPredicted RBP19.25■□□□□ 0.67
SHH-203ENST00000435425 DESP17661 470 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 POLR2EP19388 210 aaKnown RBP19.25■□□□□ 0.67
SHH-203ENST00000435425 PSMA2P25787 234 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 ADRA1BP35368 520 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 PLA2G5P39877 138 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 DGKEP52429 567 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 GFPT1Q06210 699 aaPredicted RBP19.25■□□□□ 0.67
SHH-203ENST00000435425 TBX2Q13207 712 aaPredicted RBP19.25■□□□□ 0.67
SHH-203ENST00000435425 SRSF5Q13243 272 aaKnown RBP19.25■□□□□ 0.67
SHH-203ENST00000435425 TTC39BQ5VTQ0 682 aaPredicted RBP19.25■□□□□ 0.67
SHH-203ENST00000435425 RNF43Q68DV7 783 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 ANO7Q6IWH7 933 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 ALKBH5Q6P6C2 394 aaKnown RBP19.25■□□□□ 0.67
SHH-203ENST00000435425 LRRC31Q6UY01 552 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 ADIPOR2Q86V24 386 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 LONP2Q86WA8 852 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 DRC7Q8IY82 874 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 CAMKK1Q8N5S9 505 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 CCDC185Q8N715 623 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.25■□□□□ 0.67
SHH-203ENST00000435425 ZNF557Q8N988 423 aaPredicted RBP19.25■□□□□ 0.67
SHH-203ENST00000435425 ZBTB44Q8NCP5 570 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 CENPIQ92674 756 aaPredicted RBP19.25■□□□□ 0.67
SHH-203ENST00000435425 NELL1Q92832 810 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 HAPLN3Q96S86 360 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 CNPY3Q9BT09 278 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 MAGEB5Q9BZ81 275 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 POLMQ9NP87 494 aaPredicted RBP19.25■□□□□ 0.67
SHH-203ENST00000435425 KIAA1522Q9P206 1035 aaPredicted RBP19.25■□□□□ 0.67
SHH-203ENST00000435425 PCDHGA2Q9Y5H1 932 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 STON1Q9Y6Q2 735 aa19.25■□□□□ 0.67
SHH-203ENST00000435425 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.24■□□□□ 0.67
SHH-203ENST00000435425 A0A1B0GVM2 712 aa19.24■□□□□ 0.67
SHH-203ENST00000435425 TCRBV21S2A2A0A5A6 115 aa19.24■□□□□ 0.67
SHH-203ENST00000435425 TCAF2A6NFQ2 919 aa19.24■□□□□ 0.67
SHH-203ENST00000435425 TIMM44O43615 452 aa19.24■□□□□ 0.67
SHH-203ENST00000435425 CNTN5O94779 1100 aa19.24■□□□□ 0.67
SHH-203ENST00000435425 MYBL1P10243 752 aa19.24■□□□□ 0.67
SHH-203ENST00000435425 IL12RB1P42701 662 aa19.24■□□□□ 0.67
SHH-203ENST00000435425 ZNF177Q13360 481 aaPredicted RBP19.24■□□□□ 0.67
SHH-203ENST00000435425 ZNF234Q14588 700 aa19.24■□□□□ 0.67
SHH-203ENST00000435425 EIF4HQ15056 248 aaKnown RBP19.24■□□□□ 0.67
SHH-203ENST00000435425 FUT11Q495W5 492 aa19.24■□□□□ 0.67
SHH-203ENST00000435425 FNDC3BQ53EP0 1204 aaKnown RBP19.24■□□□□ 0.67
SHH-203ENST00000435425 KIAA0907Q7Z7F0 614 aaPredicted RBP19.24■□□□□ 0.67
SHH-203ENST00000435425 CNGA4Q8IV77 575 aa19.24■□□□□ 0.67
SHH-203ENST00000435425 PGBD3Q8N328 593 aa19.24■□□□□ 0.67
SHH-203ENST00000435425 CHP1Q99653 195 aa19.24■□□□□ 0.67
SHH-203ENST00000435425 ANP32EQ9BTT0 268 aa19.24■□□□□ 0.67
SHH-203ENST00000435425 TPSD1Q9BZJ3 242 aa19.24■□□□□ 0.67
SHH-203ENST00000435425 TRIM7Q9C029 511 aa19.24■□□□□ 0.67
SHH-203ENST00000435425 THAP2Q9H0W7 228 aa19.24■□□□□ 0.67
SHH-203ENST00000435425 BCCIPQ9P287 314 aaKnown RBP eCLIP19.24■□□□□ 0.67
SHH-203ENST00000435425 THAP10Q9P2Z0 257 aaPredicted RBP19.24■□□□□ 0.67
SHH-203ENST00000435425 SCINQ9Y6U3 715 aa19.24■□□□□ 0.67
SHH-203ENST00000435425 TMEM191CA6NGB0 347 aa19.23■□□□□ 0.67
SHH-203ENST00000435425 E9PAM4 449 aa19.23■□□□□ 0.67
SHH-203ENST00000435425 AXIN1O15169 862 aa19.23■□□□□ 0.67
SHH-203ENST00000435425 AKR1B10O60218 316 aa19.23■□□□□ 0.67
SHH-203ENST00000435425 ALDH1A2O94788 518 aa19.23■□□□□ 0.67
SHH-203ENST00000435425 MOCS3O95396 460 aa19.23■□□□□ 0.67
SHH-203ENST00000435425 CSKP41240 450 aa19.23■□□□□ 0.67
SHH-203ENST00000435425 ALFQ53S48 1182 aa19.23■□□□□ 0.67
SHH-203ENST00000435425 PITRM1Q5JRX3 1037 aa19.23■□□□□ 0.67
SHH-203ENST00000435425 WDR5BQ86VZ2 330 aa19.23■□□□□ 0.67
SHH-203ENST00000435425 APCDD1Q8J025 514 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms