RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 SLC38A7Q9NVC3 462 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 MTMR10Q9NXD2 777 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.97□□□□□ -0.65
USP54-204ENST00000422491 PSAT1Q9Y617 370 aa10.97□□□□□ -0.65
USP54-204ENST00000422491 ENTPD3O75355 529 aa10.96□□□□□ -0.65
USP54-204ENST00000422491 MAP3K6O95382 1288 aa10.96□□□□□ -0.65
USP54-204ENST00000422491 EDN1P05305 212 aa10.96□□□□□ -0.65
USP54-204ENST00000422491 C8BP07358 591 aa10.96□□□□□ -0.65
USP54-204ENST00000422491 TGFB2P61812 414 aa10.96□□□□□ -0.65
USP54-204ENST00000422491 PRKG1Q13976 671 aa10.96□□□□□ -0.65
USP54-204ENST00000422491 IL23RQ5VWK5 629 aa10.96□□□□□ -0.65
USP54-204ENST00000422491 GRAMD4Q6IC98 578 aa10.96□□□□□ -0.65
USP54-204ENST00000422491 FAM196AQ6ZSG2 479 aa10.96□□□□□ -0.65
USP54-204ENST00000422491 HM13Q8TCT9 377 aa10.96□□□□□ -0.65
USP54-204ENST00000422491 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.96□□□□□ -0.65
USP54-204ENST00000422491 TAAR1Q96RJ0 339 aa10.96□□□□□ -0.65
USP54-204ENST00000422491 WRNIP1Q96S55 665 aa10.96□□□□□ -0.65
USP54-204ENST00000422491 TARS2Q9BW92 718 aaKnown RBP10.96□□□□□ -0.65
USP54-204ENST00000422491 ZNF385DQ9H6B1 395 aa10.96□□□□□ -0.65
USP54-204ENST00000422491 ZNF358Q9NW07 568 aa10.96□□□□□ -0.65
USP54-204ENST00000422491 FEM1BQ9UK73 627 aa10.96□□□□□ -0.65
USP54-204ENST00000422491 CDH7Q9ULB5 785 aa10.96□□□□□ -0.65
USP54-204ENST00000422491 CLEC11AQ9Y240 323 aa10.96□□□□□ -0.65
USP54-204ENST00000422491 HEY1Q9Y5J3 304 aa10.96□□□□□ -0.65
USP54-204ENST00000422491 SIP14410 1827 aa10.96□□□□□ -0.65
USP54-204ENST00000422491 TRIM64CA6NLI5 447 aa10.96□□□□□ -0.66
USP54-204ENST00000422491 H0YIN7 160 aa10.96□□□□□ -0.66
USP54-204ENST00000422491 STX16-NPEPL1H3BU86 382 aa10.96□□□□□ -0.66
USP54-204ENST00000422491 ZNF701M0R085 212 aaPredicted RBP10.96□□□□□ -0.66
USP54-204ENST00000422491 NOP56O00567 594 aaKnown RBP10.96□□□□□ -0.66
USP54-204ENST00000422491 HSPA4LO95757 839 aa10.96□□□□□ -0.66
USP54-204ENST00000422491 HMGCRP04035 888 aa10.96□□□□□ -0.66
USP54-204ENST00000422491 MX2P20592 715 aa10.96□□□□□ -0.66
USP54-204ENST00000422491 TGM2P21980 687 aa10.96□□□□□ -0.66
USP54-204ENST00000422491 PTGER2P43116 358 aa10.96□□□□□ -0.66
USP54-204ENST00000422491 RWDD4Q6NW29 188 aaKnown RBP10.96□□□□□ -0.66
USP54-204ENST00000422491 HOMEZQ8IX15 550 aa10.96□□□□□ -0.66
USP54-204ENST00000422491 FIBCD1Q8N539 461 aa10.96□□□□□ -0.66
USP54-204ENST00000422491 PGBD4Q96DM1 585 aa10.96□□□□□ -0.66
USP54-204ENST00000422491 MCRS1Q96EZ8 462 aa10.96□□□□□ -0.66
USP54-204ENST00000422491 RMND5BQ96G75 393 aaPredicted RBP10.96□□□□□ -0.66
USP54-204ENST00000422491 MTMR12Q9C0I1 747 aa10.96□□□□□ -0.66
USP54-204ENST00000422491 TDRD3Q9H7E2 651 aaKnown RBP10.96□□□□□ -0.66
USP54-204ENST00000422491 WDR41Q9HAD4 459 aa10.96□□□□□ -0.66
USP54-204ENST00000422491 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.96□□□□□ -0.66
USP54-204ENST00000422491 ASNSD1Q9NWL6 643 aa10.96□□□□□ -0.66
USP54-204ENST00000422491 SCN4AP35499 1836 aa10.96□□□□□ -0.66
USP54-204ENST00000422491 GOLGA8QA0A0J9YX86 632 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 FUOMA2VDF0 154 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 GOLGA8OA6NCC3 632 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 GOLGA8NF8WBI6 632 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 MATN2O00339 956 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 FBP2O00757 339 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 CFLARO15519 480 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 AMHP03971 560 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 MYCLP12524 364 aaPredicted RBP10.95□□□□□ -0.66
USP54-204ENST00000422491 P4HA1P13674 534 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 PROZP22891 400 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 ASPAP45381 313 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 PSMD7P51665 324 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 SLC5A3P53794 718 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 CDH15P55291 814 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 TRNP1Q6NT89 227 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 RSBN1LQ6PCB5 846 aaPredicted RBP10.95□□□□□ -0.66
USP54-204ENST00000422491 SCARA5Q6ZMJ2 495 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 CPSF7Q8N684 471 aaKnown RBP10.95□□□□□ -0.66
USP54-204ENST00000422491 TDRD5Q8NAT2 981 aaKnown RBP10.95□□□□□ -0.66
USP54-204ENST00000422491 ATP6V1E2Q96A05 226 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 C12orf43Q96C57 262 aaKnown RBP10.95□□□□□ -0.66
USP54-204ENST00000422491 ABHD8Q96I13 439 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 CORO1BQ9BR76 489 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 TMEM79Q9BSE2 394 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 WDR55Q9H6Y2 383 aaPredicted RBP10.95□□□□□ -0.66
USP54-204ENST00000422491 DBNDD1Q9H9R9 158 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 FBXO40Q9UH90 709 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 SEPT9Q9UHD8 586 aaPredicted RBP10.95□□□□□ -0.66
USP54-204ENST00000422491 AFG3L2Q9Y4W6 797 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 COL2A1P02458 1487 aaPredicted RBP10.95□□□□□ -0.66
USP54-204ENST00000422491 WDR27A2RRH5 827 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 FAM155AB1AL88 458 aaPredicted RBP10.95□□□□□ -0.66
USP54-204ENST00000422491 SLC22A2O15244 555 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 DGKIO75912 1065 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 ENO3P13929 434 aaPredicted RBP10.95□□□□□ -0.66
USP54-204ENST00000422491 GABRB3P28472 473 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 HALP42357 657 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 ZNF143P52747 638 aaPredicted RBP10.95□□□□□ -0.66
USP54-204ENST00000422491 BCAR1P56945 870 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 RFTN1Q14699 578 aaPredicted RBP10.95□□□□□ -0.66
USP54-204ENST00000422491 STILQ15468 1287 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 LSM12Q3MHD2 195 aaKnown RBP10.95□□□□□ -0.66
USP54-204ENST00000422491 CCDC153Q494R4 210 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 SLC9A4Q6AI14 798 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 MAMDC4Q6UXC1 1216 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 DCDC5Q6ZRR9 648 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 MCF2L2Q86YR7 1114 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 CLVS1Q8IUQ0 354 aaPredicted RBP10.95□□□□□ -0.66
USP54-204ENST00000422491 WDR49Q8IV35 697 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 TNS4Q8IZW8 715 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 ATP6V0A1Q93050 837 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 HNRNPABQ99729 332 aaKnown RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms