RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 RNF34Q969K3 372 aa22.09■■□□□ 1.13
PTPN4-202ENST00000420482 TTC17Q96AE7 1141 aa22.09■■□□□ 1.13
PTPN4-202ENST00000420482 PRICKLE1Q96MT3 831 aaPredicted RBP22.09■■□□□ 1.13
PTPN4-202ENST00000420482 BTBD1Q9H0C5 482 aa22.09■■□□□ 1.13
PTPN4-202ENST00000420482 NUCKS1Q9H1E3 243 aaKnown RBP22.09■■□□□ 1.13
PTPN4-202ENST00000420482 SYNCQ9H7C4 482 aa22.09■■□□□ 1.13
PTPN4-202ENST00000420482 PRSS16Q9NQE7 514 aa22.09■■□□□ 1.13
PTPN4-202ENST00000420482 DNAAF2Q9NVR5 837 aaKnown RBP22.09■■□□□ 1.13
PTPN4-202ENST00000420482 KIAA1522Q9P206 1035 aaPredicted RBP22.09■■□□□ 1.13
PTPN4-202ENST00000420482 CYTH4Q9UIA0 394 aa22.09■■□□□ 1.13
PTPN4-202ENST00000420482 NCKAP1Q9Y2A7 1128 aa22.09■■□□□ 1.13
PTPN4-202ENST00000420482 ADAMTS9Q9P2N4 1935 aa22.09■■□□□ 1.13
PTPN4-202ENST00000420482 CCR1P32246 355 aa22.08■■□□□ 1.13
PTPN4-202ENST00000420482 ZC3H12AQ5D1E8 599 aaKnown RBP22.08■■□□□ 1.13
PTPN4-202ENST00000420482 ZNF776Q68DI1 518 aaPredicted RBP22.08■■□□□ 1.13
PTPN4-202ENST00000420482 IL27RAQ6UWB1 636 aa22.08■■□□□ 1.13
PTPN4-202ENST00000420482 FAM124AQ86V42 546 aa22.08■■□□□ 1.13
PTPN4-202ENST00000420482 ZNF366Q8N895 744 aa22.08■■□□□ 1.13
PTPN4-202ENST00000420482 PPP1R9BQ96SB3 815 aa22.08■■□□□ 1.13
PTPN4-202ENST00000420482 NUP62CLQ9H1M0 184 aa22.08■■□□□ 1.13
PTPN4-202ENST00000420482 PDCL3Q9H2J4 239 aa22.08■■□□□ 1.13
PTPN4-202ENST00000420482 NDST4Q9H3R1 872 aa22.08■■□□□ 1.13
PTPN4-202ENST00000420482 ACP6Q9NPH0 428 aa22.08■■□□□ 1.13
PTPN4-202ENST00000420482 FSCN3Q9NQT6 498 aa22.08■■□□□ 1.13
PTPN4-202ENST00000420482 DNAJC12Q9UKB3 198 aa22.08■■□□□ 1.13
PTPN4-202ENST00000420482 FAM208BQ5VWN6 2430 aa22.08■■□□□ 1.12
PTPN4-202ENST00000420482 PCNX2A6NKB5 2137 aa22.07■■□□□ 1.12
PTPN4-202ENST00000420482 KCNU1A8MYU2 1149 aa22.07■■□□□ 1.12
PTPN4-202ENST00000420482 PES1O00541 588 aaKnown RBP22.07■■□□□ 1.12
PTPN4-202ENST00000420482 BCAT2O15382 392 aaPredicted RBP22.07■■□□□ 1.12
PTPN4-202ENST00000420482 SRPRAP08240 638 aaKnown RBP22.07■■□□□ 1.12
PTPN4-202ENST00000420482 C7P10643 843 aa22.07■■□□□ 1.12
PTPN4-202ENST00000420482 TACR2P21452 398 aa22.07■■□□□ 1.12
PTPN4-202ENST00000420482 NNMTP40261 264 aa22.07■■□□□ 1.12
PTPN4-202ENST00000420482 CSKP41240 450 aa22.07■■□□□ 1.12
PTPN4-202ENST00000420482 OXCT1P55809 520 aa22.07■■□□□ 1.12
PTPN4-202ENST00000420482 FOXC1Q12948 553 aa22.07■■□□□ 1.12
PTPN4-202ENST00000420482 SLC12A1Q13621 1099 aa22.07■■□□□ 1.12
PTPN4-202ENST00000420482 VWA3BQ502W6 1294 aa22.07■■□□□ 1.12
PTPN4-202ENST00000420482 CT47A1Q5JQC4 288 aaPredicted RBP22.07■■□□□ 1.12
PTPN4-202ENST00000420482 RABGAP1LQ5R372 815 aa22.07■■□□□ 1.12
PTPN4-202ENST00000420482 RAP1GAP2Q684P5 730 aa22.07■■□□□ 1.12
PTPN4-202ENST00000420482 C11orf57Q6ZUT1 292 aaPredicted RBP22.07■■□□□ 1.12
PTPN4-202ENST00000420482 CFAP52Q8N1V2 620 aa22.07■■□□□ 1.12
PTPN4-202ENST00000420482 ZCCHC9Q8N567 271 aaKnown RBP22.07■■□□□ 1.12
PTPN4-202ENST00000420482 SNX19Q92543 992 aa22.07■■□□□ 1.12
PTPN4-202ENST00000420482 TUBGCP2Q9BSJ2 902 aa22.07■■□□□ 1.12
PTPN4-202ENST00000420482 DDIT4Q9NX09 232 aa22.07■■□□□ 1.12
PTPN4-202ENST00000420482 IGF2RP11717 2491 aa22.07■■□□□ 1.12
PTPN4-202ENST00000420482 IGLV3-25P01717 112 aa22.06■■□□□ 1.12
PTPN4-202ENST00000420482 PROS1P07225 676 aa22.06■■□□□ 1.12
PTPN4-202ENST00000420482 RPS14P62263 151 aaKnown RBP22.06■■□□□ 1.12
PTPN4-202ENST00000420482 GRIK2Q13002 908 aa22.06■■□□□ 1.12
PTPN4-202ENST00000420482 HNRNPA1L2Q32P51 320 aaKnown RBP22.06■■□□□ 1.12
PTPN4-202ENST00000420482 PITRM1Q5JRX3 1037 aa22.06■■□□□ 1.12
PTPN4-202ENST00000420482 OR6B2Q6IFH4 312 aa22.06■■□□□ 1.12
PTPN4-202ENST00000420482 LRSAM1Q6UWE0 723 aa22.06■■□□□ 1.12
PTPN4-202ENST00000420482 PIP4P1Q86T03 277 aa22.06■■□□□ 1.12
PTPN4-202ENST00000420482 ZDHHC17Q8IUH5 632 aa22.06■■□□□ 1.12
PTPN4-202ENST00000420482 PASD1Q8IV76 773 aa22.06■■□□□ 1.12
PTPN4-202ENST00000420482 DEFB106AQ8N104 65 aa22.06■■□□□ 1.12
PTPN4-202ENST00000420482 GANCQ8TET4 914 aa22.06■■□□□ 1.12
PTPN4-202ENST00000420482 CPXM1Q96SM3 734 aa22.06■■□□□ 1.12
PTPN4-202ENST00000420482 SGK2Q9HBY8 427 aa22.06■■□□□ 1.12
PTPN4-202ENST00000420482 TMEM51Q9NW97 253 aa22.06■■□□□ 1.12
PTPN4-202ENST00000420482 PCDHB9Q9Y5E1 797 aa22.06■■□□□ 1.12
PTPN4-202ENST00000420482 MUC22E2RYF6 1773 aaPredicted RBP22.06■■□□□ 1.12
PTPN4-202ENST00000420482 TARSL2A2RTX5 802 aaKnown RBP22.05■■□□□ 1.12
PTPN4-202ENST00000420482 SEMA4FO95754 770 aa22.05■■□□□ 1.12
PTPN4-202ENST00000420482 CER1O95813 267 aa22.05■■□□□ 1.12
PTPN4-202ENST00000420482 ANP32AP39687 249 aaKnown RBP22.05■■□□□ 1.12
PTPN4-202ENST00000420482 ECT2LQ008S8 904 aa22.05■■□□□ 1.12
PTPN4-202ENST00000420482 TEAD4Q15561 434 aa22.05■■□□□ 1.12
PTPN4-202ENST00000420482 DPCR1Q3MIW9 517 aa22.05■■□□□ 1.12
PTPN4-202ENST00000420482 USP30Q70CQ3 517 aa22.05■■□□□ 1.12
PTPN4-202ENST00000420482 SLC2A13Q96QE2 648 aa22.05■■□□□ 1.12
PTPN4-202ENST00000420482 RSPH9Q9H1X1 276 aaPredicted RBP22.05■■□□□ 1.12
PTPN4-202ENST00000420482 RRN3Q9NYV6 651 aa22.05■■□□□ 1.12
PTPN4-202ENST00000420482 EIF2B4Q9UI10 523 aaKnown RBP22.05■■□□□ 1.12
PTPN4-202ENST00000420482 WASF3Q9UPY6 502 aa22.05■■□□□ 1.12
PTPN4-202ENST00000420482 ERVW-1Q9UQF0 538 aa22.05■■□□□ 1.12
PTPN4-202ENST00000420482 PCDH15Q96QU1 1955 aa22.05■■□□□ 1.12
PTPN4-202ENST00000420482 TRIM16O95361 564 aa22.04■■□□□ 1.12
PTPN4-202ENST00000420482 AFF3P51826 1226 aaKnown RBP22.04■■□□□ 1.12
PTPN4-202ENST00000420482 SIM1P81133 766 aaPredicted RBP22.04■■□□□ 1.12
PTPN4-202ENST00000420482 APBA1Q02410 837 aa22.04■■□□□ 1.12
PTPN4-202ENST00000420482 SULT2A1Q06520 285 aa22.04■■□□□ 1.12
PTPN4-202ENST00000420482 RAPGEF1Q13905 1077 aa22.04■■□□□ 1.12
PTPN4-202ENST00000420482 ARID5BQ14865 1188 aa22.04■■□□□ 1.12
PTPN4-202ENST00000420482 WDTC1Q8N5D0 677 aa22.04■■□□□ 1.12
PTPN4-202ENST00000420482 C1orf131Q8NDD1 294 aaKnown RBP22.04■■□□□ 1.12
PTPN4-202ENST00000420482 LMLNQ96KR4 655 aa22.04■■□□□ 1.12
PTPN4-202ENST00000420482 XPO7Q9UIA9 1087 aaKnown RBP22.04■■□□□ 1.12
PTPN4-202ENST00000420482 PAXBP1Q9Y5B6 917 aa22.04■■□□□ 1.12
PTPN4-202ENST00000420482 SYNJ2BP-COX16A0A087WUM0 186 aa22.03■■□□□ 1.12
PTPN4-202ENST00000420482 EDDM13A0A1B0GTR0 161 aa22.03■■□□□ 1.12
PTPN4-202ENST00000420482 A0A1B0GVM2 712 aa22.03■■□□□ 1.12
PTPN4-202ENST00000420482 TCAF2A6NFQ2 919 aa22.03■■□□□ 1.12
PTPN4-202ENST00000420482 FOXN3O00409 490 aaPredicted RBP22.03■■□□□ 1.12
PTPN4-202ENST00000420482 TPM2P07951 284 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms