RNA–Protein interactions for RNA: ENST00000419533.1

UBR4-206, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 5,583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-206ENST00000419533 RFX8Q6ZV50 586 aa8.64□□□□□ -1.03
UBR4-206ENST00000419533 PRPF39Q86UA1 669 aaKnown RBP8.64□□□□□ -1.03
UBR4-206ENST00000419533 KRT78Q8N1N4 520 aa8.64□□□□□ -1.03
UBR4-206ENST00000419533 WDR48Q8TAF3 677 aa8.64□□□□□ -1.03
UBR4-206ENST00000419533 HSFY1Q96LI6 401 aa8.64□□□□□ -1.03
UBR4-206ENST00000419533 ZIM3Q96PE6 472 aa8.64□□□□□ -1.03
UBR4-206ENST00000419533 OMDQ99983 421 aa8.64□□□□□ -1.03
UBR4-206ENST00000419533 POLR1EQ9GZS1 481 aaKnown RBP8.64□□□□□ -1.03
UBR4-206ENST00000419533 HIPK3Q9H422 1215 aa8.64□□□□□ -1.03
UBR4-206ENST00000419533 UBP1Q9NZI7 540 aa8.64□□□□□ -1.03
UBR4-206ENST00000419533 RPS6KB2Q9UBS0 482 aa8.64□□□□□ -1.03
UBR4-206ENST00000419533 Q9Y3F1 56 aa8.64□□□□□ -1.03
UBR4-206ENST00000419533 RAD51BO15315 384 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 RARGP13631 454 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 HDCP19113 662 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 PSMD5Q16401 504 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 OTOAQ7RTW8 1153 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 SH2D3CQ8N5H7 860 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 ZNF473Q8WTR7 871 aaKnown RBP8.63□□□□□ -1.03
UBR4-206ENST00000419533 CASKIN2Q8WXE0 1202 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 ADNPQ9H2P0 1102 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 GEMIN8Q9NWZ8 242 aaKnown RBP8.63□□□□□ -1.03
UBR4-206ENST00000419533 TUBGCP4Q9UGJ1 667 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 RAB23Q9ULC3 237 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 TFR2Q9UP52 801 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 GNG14A0A1W2PPG7 69 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 E5RJQ4 531 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 C1QTNF3-AMACRE9PGA6 284 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 O00370 1275 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 ZBTB39O15060 712 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 LAG3P18627 525 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 PGAM1P18669 254 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 AMPD1P23109 780 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 NUMBP49757 651 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 CCNG1P51959 295 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 RAD23BP54727 409 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 RTP1P59025 263 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 PTENP60484 403 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 SNRPD1P62314 119 aaKnown RBP8.63□□□□□ -1.03
UBR4-206ENST00000419533 CNGA2Q16280 664 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 GALNTL6Q49A17 601 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 SPANXN3Q5MJ09 141 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 NT5DC1Q5TFE4 455 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 C10orf53Q8N6V4 93 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 ZNF513Q8N8E2 541 aaPredicted RBP8.63□□□□□ -1.03
UBR4-206ENST00000419533 CXorf40AQ8TE69 158 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 REPS1Q96D71 796 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 ZFYVE19Q96K21 471 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 THUMPD3Q9BV44 507 aaKnown RBP8.63□□□□□ -1.03
UBR4-206ENST00000419533 SLC24A2Q9UI40 661 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 USP20Q9Y2K6 914 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 ANKRD36CQ5JPF3 1778 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 UBR3Q6ZT12 1888 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 OR6C75A6NL08 312 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 STAU1O95793 577 aaKnown RBP8.63□□□□□ -1.03
UBR4-206ENST00000419533 GUCA1CO95843 209 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 IFNA14P01570 189 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 KRT6AP02538 564 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 FGBP02675 491 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 KRT6BP04259 564 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 HOXB8P17481 243 aaPredicted RBP8.63□□□□□ -1.03
UBR4-206ENST00000419533 HSD17B3P37058 310 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 GRM5P41594 1212 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 KRT6CP48668 564 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 THOP1P52888 689 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 PMS1P54277 932 aaKnown RBP8.63□□□□□ -1.03
UBR4-206ENST00000419533 CAPSQ13938 189 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 CSHL1Q14406 222 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 POU6F1Q14863 301 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 GRTP1Q5TC63 336 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 PSRC1Q6PGN9 363 aaPredicted RBP8.63□□□□□ -1.03
UBR4-206ENST00000419533 LONP2Q86WA8 852 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 ADAM32Q8TC27 787 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 MAGEC3Q8TD91 643 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 ABTB1Q969K4 478 aaPredicted RBP8.63□□□□□ -1.03
UBR4-206ENST00000419533 PAFAH2Q99487 392 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 CDT1Q9H211 546 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 ACTR8Q9H981 624 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 IL1RL2Q9HB29 575 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 NCKIPSDQ9NZQ3 722 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 ARHGAP20Q9P2F6 1191 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.63□□□□□ -1.03
UBR4-206ENST00000419533 SLX4Q8IY92 1834 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 CENPAP49450 140 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 NDUFV1P49821 464 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 SMARCB1Q12824 385 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 GRB14Q14449 540 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 CNGA3Q16281 694 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 PDPK2PQ6A1A2 396 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 MCOLN3Q8TDD5 553 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 CCT8L2Q96SF2 557 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 ZDHHC6Q9H6R6 413 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 PNMA8BQ9ULN7 279 aaPredicted RBP8.63□□□□□ -1.03
UBR4-206ENST00000419533 SHOC2Q9UQ13 582 aa8.63□□□□□ -1.03
UBR4-206ENST00000419533 NFICP08651 508 aa8.62□□□□□ -1.03
UBR4-206ENST00000419533 CTSEP14091 401 aa8.62□□□□□ -1.03
UBR4-206ENST00000419533 SELPP16109 830 aa8.62□□□□□ -1.03
UBR4-206ENST00000419533 IRAK1P51617 712 aa8.62□□□□□ -1.03
UBR4-206ENST00000419533 KCNA10Q16322 511 aa8.62□□□□□ -1.03
UBR4-206ENST00000419533 RGL4Q8IZJ4 473 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms