RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 NFKBIBQ15653 356 aa16.75■□□□□ 0.27
CUX2-202ENST00000397643 SKOR2Q2VWA4 1001 aaPredicted RBP16.75■□□□□ 0.27
CUX2-202ENST00000397643 FAM133BQ5BKY9 247 aaKnown RBP16.75■□□□□ 0.27
CUX2-202ENST00000397643 C6orf118Q5T5N4 469 aa16.75■□□□□ 0.27
CUX2-202ENST00000397643 HES3Q5TGS1 186 aa16.75■□□□□ 0.27
CUX2-202ENST00000397643 NCEH1Q6PIU2 408 aa16.75■□□□□ 0.27
CUX2-202ENST00000397643 SNIP1Q8TAD8 396 aaKnown RBP16.75■□□□□ 0.27
CUX2-202ENST00000397643 EDEM1Q92611 657 aa16.75■□□□□ 0.27
CUX2-202ENST00000397643 FAXDC2Q96IV6 333 aa16.75■□□□□ 0.27
CUX2-202ENST00000397643 FBXL12Q9NXK8 326 aa16.75■□□□□ 0.27
CUX2-202ENST00000397643 FAM47DPA6NHR8 397 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 XPO1O14980 1071 aaKnown RBP16.74■□□□□ 0.27
CUX2-202ENST00000397643 MID1O15344 667 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 SIN3BO75182 1162 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 IGLV3-27P01718 113 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 ATP5BP06576 529 aaKnown RBP16.74■□□□□ 0.27
CUX2-202ENST00000397643 EPHA8P29322 1005 aaPredicted RBP16.74■□□□□ 0.27
CUX2-202ENST00000397643 SLC6A4P31645 630 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 ADIGQ0VDE8 80 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 TARDBPQ13148 414 aaKnown RBP eCLIP16.74■□□□□ 0.27
CUX2-202ENST00000397643 GOLGA7BQ2TAP0 167 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 MPP7Q5T2T1 576 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 PIK3R6Q5UE93 754 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 BSPRYQ5W0U4 402 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 RFWD3Q6PCD5 774 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 FAM186BQ8IYM0 893 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 TATDN2Q93075 761 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 CCDC47Q96A33 483 aaKnown RBP16.74■□□□□ 0.27
CUX2-202ENST00000397643 TTC17Q96AE7 1141 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 MRGPRX3Q96LB0 322 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 FCRL3Q96P31 734 aaPredicted RBP16.74■□□□□ 0.27
CUX2-202ENST00000397643 NRSN2Q9GZP1 204 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 DNAI2Q9GZS0 605 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 CLSTN2Q9H4D0 955 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 SUN2Q9UH99 717 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 ADAMTS1Q9UHI8 967 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 TSPAN16Q9UKR8 245 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 INTS6Q9UL03 887 aaKnown RBP16.74■□□□□ 0.27
CUX2-202ENST00000397643 SCML1Q9UN30 329 aa16.74■□□□□ 0.27
CUX2-202ENST00000397643 ATMQ13315 3056 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 A0A1W2PP55 124 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 TBL1XO60907 577 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 SMC2O95347 1197 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 CDK4P11802 303 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 PLA2G2AP14555 144 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 POLR2EP19388 210 aaKnown RBP16.73■□□□□ 0.27
CUX2-202ENST00000397643 CST6Q15828 149 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 HNRNPA1L2Q32P51 320 aaKnown RBP16.73■□□□□ 0.27
CUX2-202ENST00000397643 SFMBT2Q5VUG0 894 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 KRT39Q6A163 491 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 MSANTD2Q6P1R3 559 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 PCSK4Q6UW60 755 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 KANSL1Q7Z3B3 1105 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 ZNF843Q8N446 348 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 TTC39CQ8N584 583 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 EID2Q8N6I1 236 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 LSM14AQ8ND56 463 aaKnown RBP16.73■□□□□ 0.27
CUX2-202ENST00000397643 RNF139Q8WU17 664 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 MYEOVQ96EZ4 313 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 PRICKLE1Q96MT3 831 aaPredicted RBP16.73■□□□□ 0.27
CUX2-202ENST00000397643 NUP62CLQ9H1M0 184 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 NEUROG2Q9H2A3 272 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 NCKAP1Q9Y2A7 1128 aa16.73■□□□□ 0.27
CUX2-202ENST00000397643 NYNRINQ9P2P1 1898 aaKnown RBP16.73■□□□□ 0.27
CUX2-202ENST00000397643 GOLGA6L7A0A1B0GV03 622 aa16.72■□□□□ 0.27
CUX2-202ENST00000397643 GABBR2O75899 941 aa16.72■□□□□ 0.27
CUX2-202ENST00000397643 ITGAVP06756 1048 aa16.72■□□□□ 0.27
CUX2-202ENST00000397643 KRT13P13646 458 aa16.72■□□□□ 0.27
CUX2-202ENST00000397643 ABCB4P21439 1286 aa16.72■□□□□ 0.27
CUX2-202ENST00000397643 CD38P28907 300 aa16.72■□□□□ 0.27
CUX2-202ENST00000397643 GTF2H1P32780 548 aa16.72■□□□□ 0.27
CUX2-202ENST00000397643 CSKP41240 450 aa16.72■□□□□ 0.27
CUX2-202ENST00000397643 DPYDQ12882 1025 aa16.72■□□□□ 0.27
CUX2-202ENST00000397643 ARID5BQ14865 1188 aa16.72■□□□□ 0.27
CUX2-202ENST00000397643 CAMK4Q16566 473 aa16.72■□□□□ 0.27
CUX2-202ENST00000397643 C9orf64Q5T6V5 341 aa16.72■□□□□ 0.27
CUX2-202ENST00000397643 LRRC69Q6ZNQ3 347 aa16.72■□□□□ 0.27
CUX2-202ENST00000397643 DHX40Q8IX18 779 aaKnown RBP16.72■□□□□ 0.27
CUX2-202ENST00000397643 CCDC150Q8NCX0 1101 aa16.72■□□□□ 0.27
CUX2-202ENST00000397643 OR2T34Q8NGX1 318 aa16.72■□□□□ 0.27
CUX2-202ENST00000397643 IRX2Q9BZI1 471 aaPredicted RBP16.72■□□□□ 0.27
CUX2-202ENST00000397643 LRRC4Q9HBW1 653 aa16.72■□□□□ 0.27
CUX2-202ENST00000397643 GDF3Q9NR23 364 aa16.72■□□□□ 0.27
CUX2-202ENST00000397643 FZD4Q9ULV1 537 aa16.72■□□□□ 0.27
CUX2-202ENST00000397643 AK5Q9Y6K8 562 aa16.72■□□□□ 0.27
CUX2-202ENST00000397643 YKT6O15498 198 aa16.71■□□□□ 0.27
CUX2-202ENST00000397643 PRR29P0C7W0 189 aa16.71■□□□□ 0.27
CUX2-202ENST00000397643 PSMC2P35998 433 aaKnown RBP16.71■□□□□ 0.27
CUX2-202ENST00000397643 MXI1P50539 228 aa16.71■□□□□ 0.27
CUX2-202ENST00000397643 CCR5P51681 352 aa16.71■□□□□ 0.27
CUX2-202ENST00000397643 SLC8A3P57103 927 aa16.71■□□□□ 0.27
CUX2-202ENST00000397643 NXPH1P58417 271 aa16.71■□□□□ 0.27
CUX2-202ENST00000397643 DAOAP59103 153 aa16.71■□□□□ 0.27
CUX2-202ENST00000397643 BST2Q10589 180 aaKnown RBP16.71■□□□□ 0.27
CUX2-202ENST00000397643 PNOCQ13519 176 aa16.71■□□□□ 0.27
CUX2-202ENST00000397643 KLHL40Q2TBA0 621 aa16.71■□□□□ 0.27
CUX2-202ENST00000397643 PKDCCQ504Y2 493 aa16.71■□□□□ 0.27
CUX2-202ENST00000397643 ZCWPW2Q504Y3 356 aa16.71■□□□□ 0.27
CUX2-202ENST00000397643 NADSYN1Q6IA69 706 aa16.71■□□□□ 0.27
CUX2-202ENST00000397643 MMAAQ8IVH4 418 aaKnown RBP16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms