RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 OTUD3Q5T2D3 398 aaPredicted RBP11.67□□□□□ -0.54
PTPRF-203ENST00000372407 RETSATQ6NUM9 610 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 PRCCQ92733 491 aaPredicted RBP11.67□□□□□ -0.54
PTPRF-203ENST00000372407 ELMO3Q96BJ8 720 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 ACOX2Q99424 681 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 USP20Q9Y2K6 914 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 CBX4O00257 560 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 HOXA2O43364 376 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 ZSCAN5DPP0CG00 497 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 HALP42357 657 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 ARL4DP49703 201 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 CASP5P51878 434 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 ELAVL2Q12926 359 aaKnown RBP11.67□□□□□ -0.54
PTPRF-203ENST00000372407 MIIPQ5JXC2 388 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 ZCCHC23Q6ZST2 131 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 FAM126BQ8IXS8 530 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 PIWIL2Q8TC59 973 aaKnown RBP11.67□□□□□ -0.54
PTPRF-203ENST00000372407 ZNF184Q99676 751 aaPredicted RBP11.67□□□□□ -0.54
PTPRF-203ENST00000372407 UNKQ9C0B0 810 aaKnown RBP11.67□□□□□ -0.54
PTPRF-203ENST00000372407 STMN3Q9NZ72 180 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 DOLKQ9UPQ8 538 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 STARD13Q9Y3M8 1113 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 C15orf38-AP3S2A0A0A6YYH1 394 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 ANKRD63C9JTQ0 380 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 EPHB6O15197 1021 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 SMNDC1O75940 238 aaKnown RBP eCLIP11.67□□□□□ -0.54
PTPRF-203ENST00000372407 NCF4Q15080 339 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 TMC7Q7Z402 723 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 ARPINQ7Z6K5 226 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 MIER2Q8N344 545 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 PRELID2Q8N945 189 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 BAP1Q92560 729 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 TRAPPC9Q96Q05 1148 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 FBXO44Q9H4M3 255 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 KCNMB3Q9NPA1 279 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 RGS18Q9NS28 235 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 SETD4Q9NVD3 440 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 E5RJQ4 531 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 GJB6O95452 261 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 SLC2A4P14672 509 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 ACAT1P24752 427 aaKnown RBP11.66□□□□□ -0.54
PTPRF-203ENST00000372407 CCNG1P51959 295 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 ELF3P78545 371 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-203ENST00000372407 ITGB3BPQ13352 177 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-203ENST00000372407 MSLNQ13421 630 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-203ENST00000372407 ERAP2Q6P179 960 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 VGLL2Q8N8G2 317 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 OR6Y1Q8NGX8 325 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 SHC3Q92529 594 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 APBA2Q99767 749 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 ROGDIQ9GZN7 287 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 PIH1D1Q9NWS0 290 aaKnown RBP11.66□□□□□ -0.54
PTPRF-203ENST00000372407 BTNL10A8MVZ5 291 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 NKRFO15226 690 aaKnown RBP eCLIP11.66□□□□□ -0.54
PTPRF-203ENST00000372407 MAP3K13O43283 966 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 CPSF4O95639 269 aaKnown RBP11.66□□□□□ -0.54
PTPRF-203ENST00000372407 MYL4P12829 197 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 RAG1P15918 1043 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 YBX3P16989 372 aaKnown RBP eCLIP11.66□□□□□ -0.549e-8■■■□□ 19.1
PTPRF-203ENST00000372407 IL5RAQ01344 420 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 PGS1Q32NB8 556 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 CES3Q6UWW8 571 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 SLC9A9Q8IVB4 645 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 METTL6Q8TCB7 284 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 HAS1Q92839 578 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 PRDM16Q9HAZ2 1276 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 AAASQ9NRG9 546 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 TAS2R14Q9NYV8 317 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 CCDC167Q9P0B6 97 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 LNPEPQ9UIQ6 1025 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 SYNPO2Q9UMS6 1093 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 ANKRD6Q9Y2G4 727 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 TIMM13Q9Y5L4 95 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-203ENST00000372407 RCCD1A6NED2 376 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 UNC5CO95185 931 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 BCL10O95999 233 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 PPIDQ08752 370 aaKnown RBP11.66□□□□□ -0.54
PTPRF-203ENST00000372407 MAD2L1Q13257 205 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-203ENST00000372407 C15orf52Q6ZUT6 534 aaKnown RBP11.66□□□□□ -0.54
PTPRF-203ENST00000372407 FAM71AQ8IYT1 594 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 SLC2A14Q8TDB8 520 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 UCMAQ8WVF2 138 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 CDCA5Q96FF9 252 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 ZFRQ96KR1 1074 aaKnown RBP11.66□□□□□ -0.54
PTPRF-203ENST00000372407 ZFP42Q96MM3 310 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 LRRC19Q9H756 370 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 MID1IP1Q9NPA3 183 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 DMAP1Q9NPF5 467 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-203ENST00000372407 ZMYM2Q9UBW7 1377 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 A0A0U1RQJ8 604 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 SIGLEC16A6NMB1 481 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 LACTBL1A8MY62 500 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 SYNCRIPO60506 623 aaKnown RBP11.66□□□□□ -0.54
PTPRF-203ENST00000372407 PIGNO95427 931 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 NUDT17P0C025 328 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 KRT20P35900 424 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 TUBP50607 506 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 LY6KQ17RY6 165 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 FAM45BPQ6NSW5 357 aa11.66□□□□□ -0.54
PTPRF-203ENST00000372407 APOBEC3HQ6NTF7 200 aaKnown RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms