RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 CYP2W1Q8TAV3 490 aa12.04□□□□□ -0.48
PTPN1-201ENST00000371621 VCPIP1Q96JH7 1222 aa12.04□□□□□ -0.48
PTPN1-201ENST00000371621 GPATCH2LQ9NWQ4 482 aa12.04□□□□□ -0.48
PTPN1-201ENST00000371621 TOR4AQ9NXH8 423 aa12.04□□□□□ -0.48
PTPN1-201ENST00000371621 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.04□□□□□ -0.481e-6■■□□□ 12
PTPN1-201ENST00000371621 ZNF221Q9UK13 617 aa12.04□□□□□ -0.48
PTPN1-201ENST00000371621 KLHL20Q9Y2M5 609 aa12.04□□□□□ -0.48
PTPN1-201ENST00000371621 NCANO14594 1321 aa12.04□□□□□ -0.48
PTPN1-201ENST00000371621 PIGNO95427 931 aa12.04□□□□□ -0.48
PTPN1-201ENST00000371621 PIK3R1P27986 724 aa12.04□□□□□ -0.48
PTPN1-201ENST00000371621 NAMPTP43490 491 aa12.04□□□□□ -0.48
PTPN1-201ENST00000371621 PLK1P53350 603 aa12.04□□□□□ -0.48
PTPN1-201ENST00000371621 PSME3P61289 254 aa12.04□□□□□ -0.48
PTPN1-201ENST00000371621 CAPRIN1Q14444 709 aaKnown RBP12.04□□□□□ -0.48
PTPN1-201ENST00000371621 AARS2Q5JTZ9 985 aaKnown RBP12.04□□□□□ -0.48
PTPN1-201ENST00000371621 DCDC5Q6ZRR9 648 aa12.04□□□□□ -0.48
PTPN1-201ENST00000371621 GPRC5CQ9NQ84 441 aa12.04□□□□□ -0.48
PTPN1-201ENST00000371621 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.04□□□□□ -0.48
PTPN1-201ENST00000371621 TRMT13Q9NUP7 481 aaKnown RBP12.04□□□□□ -0.48
PTPN1-201ENST00000371621 BFARQ9NZS9 450 aa12.04□□□□□ -0.48
PTPN1-201ENST00000371621 PI4KBQ9UBF8 816 aa12.04□□□□□ -0.48
PTPN1-201ENST00000371621 SNTNA6NMZ2 147 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 EIF3FO00303 357 aaPredicted RBP12.03□□□□□ -0.48
PTPN1-201ENST00000371621 ALOX5P09917 674 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 RPL7AP62424 266 aaKnown RBP12.03□□□□□ -0.48
PTPN1-201ENST00000371621 ITKQ08881 620 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 MMRN1Q13201 1228 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 ORC1Q13415 861 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 GTF2H3Q13889 308 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 BANPQ8N9N5 519 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 GIPC2Q8TF65 315 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 CELF1Q92879 486 aaKnown RBP12.03□□□□□ -0.48
PTPN1-201ENST00000371621 HEXIM2Q96MH2 286 aaKnown RBP12.03□□□□□ -0.48
PTPN1-201ENST00000371621 APOL2Q9BQE5 337 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 WDR11Q9BZH6 1224 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 SENP6Q9GZR1 1112 aaPredicted RBP12.03□□□□□ -0.48
PTPN1-201ENST00000371621 GDAP2Q9NXN4 497 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 PCDH10Q9P2E7 1040 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 DNAJB4Q9UDY4 337 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 TSR3Q9UJK0 312 aaKnown RBP12.03□□□□□ -0.48
PTPN1-201ENST00000371621 GTPBP10A4D1E9 387 aaKnown RBP12.03□□□□□ -0.48
PTPN1-201ENST00000371621 MRASO14807 208 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 TMCC2O75069 709 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 ALAS1P13196 640 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 GTF2H1P32780 548 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 HOXD13P35453 343 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 GPX6P59796 221 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 SEZ6Q53EL9 994 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 CEP78Q5JTW2 689 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 SPANXN2Q5MJ10 180 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 ZNF280DQ6N043 979 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 FBXL19Q6PCT2 694 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 C4orf22Q6V702 233 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 SLC15A4Q8N697 577 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 FAR1Q8WVX9 515 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 PROX1Q92786 737 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 DLG3Q92796 817 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 EPB41L1Q9H4G0 881 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 PLLPQ9Y342 182 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 TMEM94Q12767 1356 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 EPN2O95208 641 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 VAPBO95292 243 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 MED26O95402 600 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 TAL1P17542 331 aaPredicted RBP12.03□□□□□ -0.48
PTPN1-201ENST00000371621 ARL4AP40617 200 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 ARHGDIAP52565 204 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 SLC13A2Q13183 592 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 LRP8Q14114 963 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 PSD4Q8NDX1 1056 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 HIPK3Q9H422 1215 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 IL17RBQ9NRM6 502 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 SCN3BQ9NY72 215 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 PAK5Q9P286 719 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 KIF17Q9P2E2 1029 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 SORCS3Q9UPU3 1222 aa12.03□□□□□ -0.48
PTPN1-201ENST00000371621 RIMS1Q86UR5 1692 aaKnown RBP12.02□□□□□ -0.48
PTPN1-201ENST00000371621 SH3BP5O60239 455 aa12.02□□□□□ -0.48
PTPN1-201ENST00000371621 LZTS3O60299 673 aaPredicted RBP12.02□□□□□ -0.48
PTPN1-201ENST00000371621 TGDSO95455 350 aa12.02□□□□□ -0.48
PTPN1-201ENST00000371621 BMXP51813 675 aa12.02□□□□□ -0.48
PTPN1-201ENST00000371621 ECT2LQ008S8 904 aa12.02□□□□□ -0.48
PTPN1-201ENST00000371621 TRAF3Q13114 568 aa12.02□□□□□ -0.48
PTPN1-201ENST00000371621 SF3B4Q15427 424 aaKnown RBP eCLIP12.02□□□□□ -0.481e-7■■■■■ 37.3
PTPN1-201ENST00000371621 FAM47CQ5HY64 1035 aa12.02□□□□□ -0.48
PTPN1-201ENST00000371621 BROXQ5VW32 411 aa12.02□□□□□ -0.48
PTPN1-201ENST00000371621 P3H2Q8IVL5 708 aa12.02□□□□□ -0.48
PTPN1-201ENST00000371621 LPGAT1Q92604 370 aa12.02□□□□□ -0.48
PTPN1-201ENST00000371621 SIPA1Q96FS4 1042 aa12.02□□□□□ -0.48
PTPN1-201ENST00000371621 ZNF512Q96ME7 567 aaPredicted RBP12.02□□□□□ -0.48
PTPN1-201ENST00000371621 FAM20AQ96MK3 541 aa12.02□□□□□ -0.48
PTPN1-201ENST00000371621 ZNF717Q9BY31 904 aaPredicted RBP12.02□□□□□ -0.48
PTPN1-201ENST00000371621 DCDC2Q9UHG0 476 aa12.02□□□□□ -0.48
PTPN1-201ENST00000371621 A0A088AWK7 358 aa12.02□□□□□ -0.49
PTPN1-201ENST00000371621 KRT87PA6NCN2 255 aa12.02□□□□□ -0.49
PTPN1-201ENST00000371621 TMEM221A6NGB7 291 aa12.02□□□□□ -0.49
PTPN1-201ENST00000371621 E5RJQ4 531 aa12.02□□□□□ -0.49
PTPN1-201ENST00000371621 TPP1O14773 563 aa12.02□□□□□ -0.49
PTPN1-201ENST00000371621 CYP7B1O75881 506 aa12.02□□□□□ -0.49
PTPN1-201ENST00000371621 BPGMP07738 259 aa12.02□□□□□ -0.49
PTPN1-201ENST00000371621 ABCE1P61221 599 aaKnown RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms