RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 PHACTR1Q9C0D0 580 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 CCDC90BQ9GZT6 254 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 RNF32Q9H0A6 362 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 TASP1Q9H6P5 420 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 PCDH12Q9NPG4 1184 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 ADAM22Q9P0K1 906 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 MARCH2Q9P0N8 246 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 PTGFRNQ9P2B2 879 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 NDRG3Q9UGV2 375 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 FBXW2Q9UKT8 454 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 SQORQ9Y6N5 450 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 ZMYM4Q5VZL5 1548 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 DISP1Q96F81 1524 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 FAM227AF5H4B4 570 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 F8W810 466 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 PITPNM1O00562 1244 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 CYB5BO43169 146 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 SLC28A2O43868 658 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 PLEKHA8P1O95397 391 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 NADKO95544 446 aaPredicted RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 AKR1B1P15121 316 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 ZNF7P17097 686 aaPredicted RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 NPR3P17342 541 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 RPA3P35244 121 aaPredicted RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 CNGA3Q16281 694 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 LRRC23Q53EV4 343 aaPredicted RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 VARS2Q5ST30 1063 aaKnown RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 TSHZ3Q63HK5 1081 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 KIF18BQ86Y91 864 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 PDIK1LQ8N165 341 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 ALLCQ8N6M5 410 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 RIN3Q8TB24 985 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 MCUR1Q96AQ8 359 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 DYNLL2Q96FJ2 89 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 CEP95Q96GE4 821 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 HNRNPABQ99729 332 aaKnown RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 CCT7Q99832 543 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 FAM192AQ9GZU8 254 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 DHX35Q9H5Z1 703 aaKnown RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 WDCPQ9H6R7 721 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 MTMR4Q9NYA4 1195 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 UBP1Q9NZI7 540 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 KLQ9UEF7 1012 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 KPNA7A9QM74 516 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 GTPBP1O00178 669 aaKnown RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 EEF2KO00418 725 aaKnown RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 SEMA3DO95025 777 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 FTH1P02794 183 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 CSTBP04080 98 aaKnown RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 MYBL1P10243 752 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 GJB2P29033 226 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 MLH1P40692 756 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 MAGEA1P43355 309 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 PSMD8P48556 350 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 STX17P56962 302 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 PPP4CP60510 307 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 ARG2P78540 354 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 SKOR1P84550 965 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 SMU1Q2TAY7 513 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 TRIM61Q5EBN2 209 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 MLIPQ5VWP3 458 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 KIAA0895LQ68EN5 471 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 SAMD14Q8IZD0 417 aaPredicted RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 FBXO39Q8N4B4 442 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 SVOPQ8N4V2 548 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 PIP4K2CQ8TBX8 421 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 TMEM209Q96SK2 561 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 TRMT13Q9NUP7 481 aaKnown RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 GDE1Q9NZC3 331 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 ZNF180Q9UJW8 692 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 DYNC1LI1Q9Y6G9 523 aaKnown RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 GRIN2DO15399 1336 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 FRMPD4Q14CM0 1322 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 TNS2Q63HR2 1409 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 ANGPT2O15123 496 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 ZBTB7BO15156 539 aaPredicted RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 CYP26A1O43174 497 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 IFNA14P01570 189 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 LYNP07948 512 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 CD46P15529 392 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 ATP4AP20648 1035 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 PIK3CGP48736 1102 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 FXR1P51114 621 aaKnown RBP eCLIP4.19□□□□□ -1.74
USH2A-202ENST00000366942 SLC6A3Q01959 620 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 ZNF543Q08ER8 600 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 ITPK1Q13572 414 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 RUNX2Q13950 521 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 CDO1Q16878 200 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 MINDY4Q4G0A6 757 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 KLHL22Q53GT1 634 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 HSP90AA5PQ58FG0 334 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 TMEM211Q6ICI0 200 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 HIBCHQ6NVY1 386 aaPredicted RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 MTHFD1LQ6UB35 978 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 RSPO2Q6UXX9 243 aaPredicted RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 KYAT3Q6YP21 454 aaKnown RBP4.19□□□□□ -1.74
USH2A-202ENST00000366942 TMPPEQ6ZT21 453 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 TPGS1Q6ZTW0 290 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 PIM3Q86V86 326 aa4.19□□□□□ -1.74
USH2A-202ENST00000366942 CCDC60Q8IWA6 550 aaPredicted RBP4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms