RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 SCINQ9Y6U3 715 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 PTPRSQ13332 1948 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 TBKBP1A7MCY6 615 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 I3L4J1 428 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 WFS1O76024 890 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 HAUS5O94927 633 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 OAZ2O95190 189 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 GALTP07902 379 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 PCSK1P29120 753 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 TKTP29401 623 aaKnown RBP10.4□□□□□ -0.75
SYNE1-203ENST00000354674 OR1G1P47890 313 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 SLC11A1P49279 550 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 ZBTB16Q05516 673 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 PAN2Q504Q3 1202 aaKnown RBP10.4□□□□□ -0.75
SYNE1-203ENST00000354674 C2CD6Q53TS8 623 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 C6orf118Q5T5N4 469 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 IYDQ6PHW0 289 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 VSTM1Q6UX27 236 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 METTL23Q86XA0 190 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 XYLT1Q86Y38 959 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 ENDOVQ8N8Q3 282 aaKnown RBP10.4□□□□□ -0.75
SYNE1-203ENST00000354674 UBA3Q8TBC4 463 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 HASPINQ8TF76 798 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 MRPL47Q9HD33 250 aaKnown RBP10.4□□□□□ -0.75
SYNE1-203ENST00000354674 FBXO6Q9NRD1 293 aaPredicted RBP10.4□□□□□ -0.75
SYNE1-203ENST00000354674 VPS51Q9UID3 782 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 APPL1Q9UKG1 709 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 ADAM28Q9UKQ2 775 aa10.4□□□□□ -0.75
SYNE1-203ENST00000354674 TIMM13Q9Y5L4 95 aaPredicted RBP10.4□□□□□ -0.75
SYNE1-203ENST00000354674 SYN3O14994 580 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 AMHP03971 560 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 ERBB2P04626 1255 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 ALDH2P05091 517 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 CCDC130P13994 396 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 BCAT1P54687 386 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 BST2Q10589 180 aaKnown RBP10.39□□□□□ -0.75
SYNE1-203ENST00000354674 ATP1A4Q13733 1029 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 MRPL58Q14197 206 aaKnown RBP10.39□□□□□ -0.75
SYNE1-203ENST00000354674 KYNUQ16719 465 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 LLGL2Q6P1M3 1020 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 RAPH1Q70E73 1250 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 ACTRT1Q8TDG2 376 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 MCRS1Q96EZ8 462 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 HES6Q96HZ4 224 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 HEPHQ9BQS7 1158 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 N6AMT1Q9Y5N5 214 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 AK5Q9Y6K8 562 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 GABBR2O75899 941 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 NELFEP18615 380 aaKnown RBP10.39□□□□□ -0.75
SYNE1-203ENST00000354674 ACAT1P24752 427 aaKnown RBP10.39□□□□□ -0.75
SYNE1-203ENST00000354674 EIF2B2P49770 351 aaKnown RBP10.39□□□□□ -0.75
SYNE1-203ENST00000354674 EIF3BP55884 814 aaKnown RBP10.39□□□□□ -0.75
SYNE1-203ENST00000354674 PSMC1P62191 440 aaKnown RBP10.39□□□□□ -0.75
SYNE1-203ENST00000354674 PMF1Q6P1K2 205 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 C4orf33Q8N1A6 199 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 EFCAB3Q8N7B9 438 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 GABPB2Q8TAK5 448 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-203ENST00000354674 GSDMBQ8TAX9 411 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 SLC2A14Q8TDB8 520 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.39□□□□□ -0.75
SYNE1-203ENST00000354674 COLEC11Q9BWP8 271 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 DUSP16Q9BY84 665 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 B3GNT5Q9BYG0 378 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 HCSTQ9UBK5 93 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 HESX1Q9UBX0 185 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 TJP2Q9UDY2 1190 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 PHTF1Q9UMS5 762 aa10.39□□□□□ -0.75
SYNE1-203ENST00000354674 KIAA0100Q14667 2235 aaKnown RBP10.39□□□□□ -0.75
SYNE1-203ENST00000354674 NLRC5Q86WI3 1866 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 TMEM191CA6NGB0 347 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 CES2O00748 559 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 AGTP01019 485 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 FGFR3P22607 806 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 DEFB103AP81534 67 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 DSG1Q02413 1049 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 TAP1Q03518 808 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 DLG1Q12959 904 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 INTS6LQ5JSJ4 861 aaKnown RBP10.38□□□□□ -0.75
SYNE1-203ENST00000354674 OVOS1Q6IE37 1185 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 KLHDC10Q6PID8 442 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 APLFQ8IW19 511 aaPredicted RBP10.38□□□□□ -0.75
SYNE1-203ENST00000354674 CPNE9Q8IYJ1 553 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 FBXO27Q8NI29 283 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 PYDC1Q8WXC3 89 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 CASP10Q92851 521 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 CD101Q93033 1021 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 MAELQ96JY0 434 aaKnown RBP10.38□□□□□ -0.75
SYNE1-203ENST00000354674 ARL8BQ9NVJ2 186 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 EURLQ9NYK6 297 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 NKIRAS1Q9NYS0 192 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 MOSPD1Q9UJG1 213 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 ALG6Q9Y672 507 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 VWA8A3KMH1 1905 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 MYBPHLA2RUH7 354 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 FBP2O00757 339 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 PPIDQ08752 370 aaKnown RBP10.38□□□□□ -0.75
SYNE1-203ENST00000354674 AP1B1Q10567 949 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 PPIGQ13427 754 aaKnown RBP eCLIP10.38□□□□□ -0.75
SYNE1-203ENST00000354674 CCDC142Q17RM4 750 aa10.38□□□□□ -0.75
SYNE1-203ENST00000354674 GALNT4Q8N4A0 578 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms