RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 LRRC40Q9H9A6 602 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 WDR41Q9HAD4 459 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 PDGFCQ9NRA1 345 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 PRKAG3Q9UGI9 489 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 ABT1Q9ULW3 272 aaKnown RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 ST3GAL5Q9UNP4 418 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 ACOT9Q9Y305 439 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 NCAM2O15394 837 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 AKAP8O43823 692 aaKnown RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 TNFRSF8P28908 595 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 CRABP2P29373 138 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 CBX5P45973 191 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 FAM187BQ17R55 369 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 DENND5BQ6ZUT9 1274 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 UNC5CLQ8IV45 518 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 MAGEC3Q8TD91 643 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 MKNK1Q9BUB5 465 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 LRMDAQ9H2I8 198 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 CDC42EP4Q9H3Q1 356 aaKnown RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 TRIM64CA6NLI5 447 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 SNRNP200O75643 2136 aaKnown RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 KCNH1O95259 989 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 FCER1AP12319 257 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 ITGA2P17301 1181 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 MUTP22033 750 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 CYP24A1Q07973 514 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 INTS11Q5TA45 600 aaKnown RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 TIGD7Q6NT04 549 aaPredicted RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 SPATA2LQ8IUW3 424 aaPredicted RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 TRIM48Q8IWZ4 208 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 KCTD17Q8N5Z5 321 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 EMC1Q8N766 993 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 CAB39LQ9H9S4 337 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 GTF3C4Q9UKN8 822 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 RTTNQ86VV8 2226 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 CAMTA2O94983 1202 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 C11orf63Q6NUN7 778 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 FAM196AQ6ZSG2 479 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 ZSCAN18Q8TBC5 510 aaPredicted RBP6.3□□□□□ -1.4
CSMD1-201ENST00000335551 S100PBPQ96BU1 408 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 GNPTGQ9UJJ9 305 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 DHRS7Q9Y394 339 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 ALG6Q9Y672 507 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 PREX2Q70Z35 1606 aa6.3□□□□□ -1.4
CSMD1-201ENST00000335551 TET3O43151 1660 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 CES2O00748 559 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 LARGE1O95461 756 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 IFNA16P05015 189 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 OGNP20774 298 aaKnown RBP6.29□□□□□ -1.4
CSMD1-201ENST00000335551 FGFR3P22607 806 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 PIK3CGP48736 1102 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 ALDH3A2P51648 485 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 ST8SIA6P61647 398 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 BNIP2Q12982 314 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 FGD3Q5JSP0 725 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 CLYBLQ8N0X4 340 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 CKAP2Q8WWK9 683 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 ERGIC2Q96RQ1 377 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 CPNE1Q99829 537 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 EIF2AK1Q9BQI3 630 aaKnown RBP6.29□□□□□ -1.4
CSMD1-201ENST00000335551 SPAG4Q9NPE6 437 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 TMEM51Q9NW97 253 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 XPR1Q9UBH6 696 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 IKZF3Q9UKT9 509 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 RGS14O43566 566 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 ASMTLO95671 621 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 EYA4O95677 639 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 IL18R1Q13478 541 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 TAF5Q15542 800 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 FAM126BQ8IXS8 530 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 POMGNT2Q8NAT1 580 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 OR8H1Q8NGG4 311 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 FAM118BQ9BPY3 351 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.29□□□□□ -1.4
CSMD1-201ENST00000335551 GMPPBQ9Y5P6 360 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 BRWD1Q9NSI6 2320 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 USP17L3A6NCW0 530 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 USP17L4A6NCW7 530 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 CRTAMO95727 393 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 LDOC1O95751 146 aaPredicted RBP6.29□□□□□ -1.4
CSMD1-201ENST00000335551 ZNF844Q08AG5 666 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 USP17L1Q7RTZ2 530 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 FNDC5Q8NAU1 212 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 FAR1Q8WVX9 515 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 OSBP2Q969R2 916 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 DNAJC11Q9NVH1 559 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 STAU1O95793 577 aaKnown RBP6.29□□□□□ -1.4
CSMD1-201ENST00000335551 PRG2P13727 222 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 OMPP47874 163 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 TNK2Q07912 1038 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 ZMYND11Q15326 602 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 NRF1Q16656 503 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 FEZF2Q8TBJ5 459 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 SPPL2AQ8TCT8 520 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 ACAT2Q9BWD1 397 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 TBC1D24Q9ULP9 559 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 PCDHGA4Q9Y5G9 962 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 SAMD9LQ8IVG5 1584 aa6.29□□□□□ -1.4
CSMD1-201ENST00000335551 A0A0A6YYK5 440 aaPredicted RBP6.29□□□□□ -1.4
CSMD1-201ENST00000335551 PRODHO43272 600 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms