RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 C20orf96Q9NUD7 363 aaPredicted RBP7.03□□□□□ -1.28
SF3B1-201ENST00000335508 COMMD8Q9NX08 183 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 PSD3Q9NYI0 1048 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 ARIH1Q9Y4X5 557 aaPredicted RBP7.03□□□□□ -1.28
SF3B1-201ENST00000335508 PIRO00625 290 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 IRAK2O43187 625 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 CCL5P13501 91 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 PCSK2P16519 638 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 STMN1P16949 149 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 C15orf59Q2T9L4 293 aaPredicted RBP7.03□□□□□ -1.28
SF3B1-201ENST00000335508 NXNQ6DKJ4 435 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 FAM183BPQ6ZVS7 135 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 GPR65Q8IYL9 337 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 ZCCHC9Q8N567 271 aaKnown RBP7.03□□□□□ -1.28
SF3B1-201ENST00000335508 C12orf29Q8N999 325 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 ACMSDQ8TDX5 336 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 SUSD6Q92537 303 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 PAWRQ96IZ0 340 aaKnown RBP7.03□□□□□ -1.28
SF3B1-201ENST00000335508 CHST7Q9NS84 486 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 NCKIPSDQ9NZQ3 722 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 DEC1Q9P2X7 70 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 ZNF212Q9UDV6 495 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 VANGL2Q9ULK5 521 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 MAFFQ9ULX9 164 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 CACNA1EQ15878 2313 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 PLCH1Q4KWH8 1693 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 SLCO1B7G3V0H7 640 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 NUDT17P0C025 328 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 PRKAA2P54646 552 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 STX3Q13277 289 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 TBCCQ15814 346 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 CFAP61Q8NHU2 1237 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 PCED1BQ96HM7 432 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 SAMD11Q96NU1 681 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 LRRC37BQ96QE4 947 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 SEMA4AQ9H3S1 761 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 BACE2Q9Y5Z0 518 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 PTPRJQ12913 1337 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 NUMA1Q14980 2115 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 RCCD1A6NED2 376 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 ZNF487B1APH4 448 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 CCDC130P13994 396 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 RBL1P28749 1068 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 PBX3P40426 434 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 CD151P48509 253 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 CDK7P50613 346 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 SNRPD1P62314 119 aaKnown RBP7.03□□□□□ -1.28
SF3B1-201ENST00000335508 CDK18Q07002 472 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 MMEL1Q495T6 779 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 TEX44Q53QW1 395 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 FBXO36Q8NEA4 188 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 LMO3Q8TAP4 145 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 CASKIN2Q8WXE0 1202 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 LENG1Q96BZ8 264 aaPredicted RBP7.03□□□□□ -1.28
SF3B1-201ENST00000335508 PANX3Q96QZ0 392 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 EPC1Q9H2F5 836 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 RNF39Q9H2S5 420 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 TLE6Q9H808 572 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 PTPRHQ9HD43 1115 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 GJD2Q9UKL4 321 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 NHSQ6T4R5 1651 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 A0A1W2PQ45 241 aaPredicted RBP7.03□□□□□ -1.28
SF3B1-201ENST00000335508 A0A1W2PQY0 241 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 ALOX15BO15296 676 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 MDH1P40925 334 aaKnown RBP7.03□□□□□ -1.28
SF3B1-201ENST00000335508 CLCNKBP51801 687 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 IFT88Q13099 833 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 TSTA3Q13630 321 aaPredicted RBP7.03□□□□□ -1.28
SF3B1-201ENST00000335508 PARP15Q460N3 678 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 ARMC12Q5T9G4 340 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 SCARA3Q6AZY7 606 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 JOSD2Q8TAC2 188 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 BLOC1S5Q8TDH9 187 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 ZIM3Q96PE6 472 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 UPF3AQ9H1J1 476 aaKnown RBP7.03□□□□□ -1.28
SF3B1-201ENST00000335508 NDFIP2Q9NV92 336 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 SMARCAL1Q9NZC9 954 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 EPS15L1Q9UBC2 864 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 PPARGC1AQ9UBK2 798 aaKnown RBP7.03□□□□□ -1.28
SF3B1-201ENST00000335508 SLC25A13Q9UJS0 675 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 MYH2Q9UKX2 1941 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 TMEM120BA0PK00 339 aa7.02□□□□□ -1.28
SF3B1-201ENST00000335508 C5orf60A6NFR6 353 aa7.02□□□□□ -1.28
SF3B1-201ENST00000335508 MYO1DO94832 1006 aa7.02□□□□□ -1.28
SF3B1-201ENST00000335508 KRT4P19013 534 aa7.02□□□□□ -1.28
SF3B1-201ENST00000335508 GABRR2P28476 465 aa7.02□□□□□ -1.28
SF3B1-201ENST00000335508 TNFRSF8P28908 595 aa7.02□□□□□ -1.28
SF3B1-201ENST00000335508 IFNA8P32881 189 aa7.02□□□□□ -1.28
SF3B1-201ENST00000335508 TTC39BQ5VTQ0 682 aaPredicted RBP7.02□□□□□ -1.28
SF3B1-201ENST00000335508 ARMC3Q5W041 872 aa7.02□□□□□ -1.28
SF3B1-201ENST00000335508 GDF6Q6KF10 455 aaPredicted RBP7.02□□□□□ -1.28
SF3B1-201ENST00000335508 CERS6Q6ZMG9 384 aa7.02□□□□□ -1.28
SF3B1-201ENST00000335508 AGMOQ6ZNB7 445 aa7.02□□□□□ -1.28
SF3B1-201ENST00000335508 OTOP2Q7RTS6 562 aa7.02□□□□□ -1.28
SF3B1-201ENST00000335508 C12orf50Q8NA57 414 aaPredicted RBP7.02□□□□□ -1.28
SF3B1-201ENST00000335508 KREMEN2Q8NCW0 462 aa7.02□□□□□ -1.28
SF3B1-201ENST00000335508 FAM84AQ96KN4 292 aa7.02□□□□□ -1.28
SF3B1-201ENST00000335508 CSPG4P5Q96PW8 444 aa7.02□□□□□ -1.28
SF3B1-201ENST00000335508 NT5MQ9NPB1 228 aa7.02□□□□□ -1.28
SF3B1-201ENST00000335508 GABRQQ9UN88 632 aa7.02□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms