RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 RHBDF2Q6PJF5 856 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 LRRC31Q6UY01 552 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 Q6ZNB5 142 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 GSTA5Q7RTV2 222 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 ARHGAP12Q8IWW6 846 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 HS6ST3Q8IZP7 471 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 UMODL1-AS1Q8N2C9 162 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 SHKBP1Q8TBC3 707 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 ADAMTS19Q8TE59 1207 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 RSAD2Q8WXG1 361 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 ARNTL2Q8WYA1 636 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 ART4Q93070 314 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 FATE1Q969F0 183 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 HDAC11Q96DB2 347 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 TSGA13Q96PP4 275 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 ZYG11BQ9C0D3 744 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 SIK2Q9H0K1 926 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 DZANK1Q9NVP4 752 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 ASIC3Q9UHC3 531 aa15.36■□□□□ 0.05
CCDC88C-202ENST00000334448 TRAV19A0A0A6YYK7 116 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 C5orf60A6NFR6 353 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 EPOPA6NHQ4 379 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 H7C0C1 242 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 SGK1O00141 431 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 SMAPO00193 183 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 MTSS1O43312 755 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 MOSPD3O75425 235 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 GCATO75600 419 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 RFPL2O75678 378 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 KLKB1P03952 638 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 TCF3P15923 654 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 TACR2P21452 398 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 GGCXP38435 758 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 MAGEA6P43360 314 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 ATP5OP48047 213 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 MAPKAPK2P49137 400 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 NDST2P52849 883 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 GDF10P55107 478 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 PPIDQ08752 370 aaKnown RBP15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 CBLBQ13191 982 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 PRSS36Q5K4E3 855 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 TMEM184AQ6ZMB5 413 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 ADGRD2Q7Z7M1 963 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 ZC3H18Q86VM9 953 aaKnown RBP15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 MREGQ8N565 214 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 GLIS1Q8NBF1 620 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 GDPD5Q8WTR4 605 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 TFB1MQ8WVM0 346 aaKnown RBP15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 PPP2R3CQ969Q6 453 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 TIFAQ96CG3 184 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 LRRC45Q96CN5 670 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 DDX50Q9BQ39 737 aaKnown RBP15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 CORO1BQ9BR76 489 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 FOXP3Q9BZS1 431 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 PRDM12Q9H4Q4 367 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 TLE6Q9H808 572 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 NFU1Q9UMS0 254 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 ARHGAP26Q9UNA1 814 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 SNX24Q9Y343 169 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 TRANK1O15050 2925 aa15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 MTCL1Q9Y4B5 1905 aaKnown RBP15.35■□□□□ 0.05
CCDC88C-202ENST00000334448 DNALI1O14645 258 aaPredicted RBP15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 ATP8B1O43520 1251 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 RHOP08100 348 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 SRGAP2BP0DMP2 458 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 MBL2P11226 248 aaPredicted RBP15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 HDCP19113 662 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 RBL1P28749 1068 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 WEE1P30291 646 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 CORO1AP31146 461 aaKnown RBP15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 GARSP41250 739 aaKnown RBP15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 CCR2P41597 374 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 CYP4F8P98187 520 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 CALCOCO2Q13137 446 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 ADGRF1Q5T601 910 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 TTC39BQ5VTQ0 682 aaPredicted RBP15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 RAP1GAP2Q684P5 730 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 TXNDC8Q6A555 127 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 RWDD4Q6NW29 188 aaKnown RBP15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 CHSY1Q86X52 802 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 DDX42Q86XP3 938 aaKnown RBP eCLIP15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 KIAA1958Q8N8K9 716 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 ARL14EPQ8N8R7 260 aaPredicted RBP15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 FAM71DQ8N9W8 422 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 HTR3CQ8WXA8 447 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 IFT81Q8WYA0 676 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 SLC22A12Q96S37 553 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 PHACTR1Q9C0D0 580 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 TSPYL1Q9H0U9 437 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 NEUROG2Q9H2A3 272 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 DPH5Q9H2P9 285 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 ATXN3LQ9H3M9 355 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 TASP1Q9H6P5 420 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 SFXN1Q9H9B4 322 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 PAK5Q9P286 719 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 DNMT3BQ9UBC3 853 aaKnown RBP15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 VANGL2Q9ULK5 521 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 SHOC2Q9UQ13 582 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 ZNF510Q9Y2H8 683 aa15.34■□□□□ 0.05
CCDC88C-202ENST00000334448 CPQQ9Y646 472 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms