RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ZNF606Q8WXB4 792 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 P2RX7Q99572 595 aaKnown RBP11.75□□□□□ -0.53
VPS39-201ENST00000318006 PRG3Q9Y2Y8 225 aaPredicted RBP11.75□□□□□ -0.53
VPS39-201ENST00000318006 XRN1Q8IZH2 1706 aaKnown RBP11.75□□□□□ -0.53
VPS39-201ENST00000318006 FAM237BA0A1B0GVD1 139 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 PTGES3LE9PB15 166 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 GPR182O15218 404 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 ARIH2O95376 493 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 MYL4P12829 197 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 UQCRBP14927 111 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 AKT1P31749 480 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 THPOP40225 353 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 GJA8P48165 433 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 DDR2Q16832 855 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 LIN52Q52LA3 116 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 IL31Q6EBC2 164 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 EID3Q8N140 333 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 PIWIL2Q8TC59 973 aaKnown RBP11.75□□□□□ -0.53
VPS39-201ENST00000318006 DNAJC19Q96DA6 116 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 SLC25A23Q9BV35 468 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 CHID1Q9BWS9 393 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 LSM7Q9UK45 103 aaKnown RBP11.75□□□□□ -0.53
VPS39-201ENST00000318006 BAIAP3O94812 1187 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 CYBBP04839 570 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 ABHD2P08910 425 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 PKNOX1P55347 436 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 FCGRTP55899 365 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 CNTN2Q02246 1040 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 CRY2Q49AN0 593 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 RNF180Q86T96 592 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 OR7A2PQ8NGA2 310 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 KAT2BQ92831 832 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 WDCPQ9H6R7 721 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 WDR41Q9HAD4 459 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 PIDD1Q9HB75 910 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 GBA2Q9HCG7 927 aaPredicted RBP11.75□□□□□ -0.53
VPS39-201ENST00000318006 PNPLA3Q9NST1 481 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 RCCD1A6NED2 376 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 CYB561D2O14569 222 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 CSDE1O75534 798 aaKnown RBP11.75□□□□□ -0.53
VPS39-201ENST00000318006 MAP3K6O95382 1288 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 GALK1P51570 392 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 ANGPT1Q15389 498 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 GALNTL6Q49A17 601 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 CBWD6Q4V339 395 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 CBWD3Q5JTY5 395 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 CBWD5Q5RIA9 395 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 LRRC55Q6ZSA7 311 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 ZCCHC23Q6ZST2 131 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 TMEM26Q6ZUK4 368 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 FAM9CQ8IZT9 166 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 EMC1Q8N766 993 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 REPS2Q8NFH8 660 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 SLITRK1Q96PX8 696 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 PPP1R10Q96QC0 940 aaKnown RBP11.75□□□□□ -0.53
VPS39-201ENST00000318006 DGCR6LQ9BY27 220 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 KRT84Q9NSB2 600 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 USP18Q9UMW8 372 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 NDUFAF1Q9Y375 327 aa11.75□□□□□ -0.53
VPS39-201ENST00000318006 NKRFO15226 690 aaKnown RBP eCLIP11.74□□□□□ -0.53
VPS39-201ENST00000318006 DDHD2O94830 711 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 F9P00740 461 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 ALOX5P09917 674 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 CASP5P51878 434 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 TAB1Q15750 504 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 DUPD1Q68J44 220 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 SLC22A9Q8IVM8 553 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 ADGRF2Q8IZF7 708 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 S100ZQ8WXG8 99 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 VCPIP1Q96JH7 1222 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 SPRTNQ9H040 489 aaPredicted RBP11.74□□□□□ -0.53
VPS39-201ENST00000318006 POLR1BQ9H9Y6 1135 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 CHST7Q9NS84 486 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 VPS9D1Q9Y2B5 631 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 BTNL10A8MVZ5 291 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 MGRN1O60291 552 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 TNFRSF21O75509 655 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 UPP2O95045 317 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 PTPRAP18433 802 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 CCT3P49368 545 aaKnown RBP11.74□□□□□ -0.53
VPS39-201ENST00000318006 GEMP55040 296 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 EPS8Q12929 822 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 POLD3Q15054 466 aaPredicted RBP11.74□□□□□ -0.53
VPS39-201ENST00000318006 BROXQ5VW32 411 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 PTRHD1Q6GMV3 140 aaKnown RBP11.74□□□□□ -0.53
VPS39-201ENST00000318006 TTC7BQ86TV6 843 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 VSIG10LQ86VR7 867 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 CHSY1Q86X52 802 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 KRT73Q86Y46 540 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 BRSK2Q8IWQ3 736 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 GPC2Q8N158 579 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 SNX31Q8N9S9 440 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 SH3KBP1Q96B97 665 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 RNF145Q96MT1 663 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 RAD54BQ9Y620 910 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 AP4B1Q9Y6B7 739 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 CENPXA8MT69 81 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 ACKR2O00590 384 aa11.74□□□□□ -0.53
VPS39-201ENST00000318006 NPM3O75607 178 aaKnown RBP11.74□□□□□ -0.53
VPS39-201ENST00000318006 ATG7O95352 703 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms