RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 SEC22BO75396 215 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 HIRAP54198 1017 aaPredicted RBP14.14□□□□□ -0.15
CSPG4-201ENST00000308508 SLC20A2Q08357 652 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 MSLNQ13421 630 aaPredicted RBP14.14□□□□□ -0.15
CSPG4-201ENST00000308508 LPIN1Q14693 890 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 NEK5Q6P3R8 708 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 DEPDC4Q8N2C3 294 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 POP5Q969H6 163 aaKnown RBP14.14□□□□□ -0.15
CSPG4-201ENST00000308508 FAM136AQ96C01 138 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 PNPLA3Q9NST1 481 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 S100GP29377 79 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 RUNDC3AQ59EK9 446 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 TCAIMQ8N3R3 496 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 COLGALT1Q8NBJ5 622 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 AKAP7Q9P0M2 348 aaPredicted RBP14.14□□□□□ -0.15
CSPG4-201ENST00000308508 GGA2Q9UJY4 613 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 C3orf18Q9UK00 162 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 AP4E1Q9UPM8 1137 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 PSMD12O00232 456 aaPredicted RBP14.14□□□□□ -0.15
CSPG4-201ENST00000308508 GH1P01241 217 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 HLFQ16534 295 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 EFCAB12Q6NXP0 572 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 SPIRE2Q8WWL2 714 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 DMTF1Q9Y222 760 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 PLOD3O60568 738 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 VDRP11473 427 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 XRRA1Q6P2D8 792 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 CHPFQ8IZ52 775 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 GIPC3Q8TF64 312 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 PRKD2Q9BZL6 878 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 ZNF112Q9UJU3 913 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 RAB21Q9UL25 225 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 ZNF609O15014 1411 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 BAZ2BQ9UIF8 2168 aaKnown RBP14.14□□□□□ -0.15
CSPG4-201ENST00000308508 FBXO21O94952 628 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 CAPGP40121 348 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 BORCS5Q969J3 196 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 CCDC3Q9BQI4 270 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 MTG1Q9BT17 334 aaPredicted RBP14.14□□□□□ -0.15
CSPG4-201ENST00000308508 OSBPL11Q9BXB4 747 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 KCNH4Q9UQ05 1017 aa14.14□□□□□ -0.15
CSPG4-201ENST00000308508 A0A0X1KG70 313 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 SMCO1Q147U7 214 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 BPIFB6Q8NFQ5 453 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 QRICH2Q9H0J4 1663 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 TRDMT1O14717 391 aaKnown RBP14.13□□□□□ -0.15
CSPG4-201ENST00000308508 CYP7B1O75881 506 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 PROSCO94903 275 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 FGRP09769 529 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 FOSL2P15408 326 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 PIK3CGP48736 1102 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 BMPR2Q13873 1038 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 PIK3C3Q8NEB9 887 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 IFRD1O00458 451 aaPredicted RBP14.13□□□□□ -0.15
CSPG4-201ENST00000308508 UQCRBP14927 111 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 ZNF37AP17032 561 aaPredicted RBP14.13□□□□□ -0.15
CSPG4-201ENST00000308508 CD302Q8IX05 232 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 OR52L1Q8NGH7 329 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 MXRA8Q9BRK3 442 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 ACADLP28330 430 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 CYP24A1Q07973 514 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 RBM44Q6ZP01 1051 aaKnown RBP14.13□□□□□ -0.15
CSPG4-201ENST00000308508 PTCD3Q96EY7 689 aaKnown RBP14.13□□□□□ -0.15
CSPG4-201ENST00000308508 CDC40O60508 579 aaKnown RBP eCLIP14.13□□□□□ -0.15
CSPG4-201ENST00000308508 GJA8P48165 433 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 OXCT1P55809 520 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 CDH17Q12864 832 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 INTS11Q5TA45 600 aaKnown RBP14.13□□□□□ -0.15
CSPG4-201ENST00000308508 PGBD2Q6P3X8 592 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 SFRP1Q8N474 314 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 NEK6Q9HC98 313 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 FARP2O94887 1054 aaPredicted RBP14.13□□□□□ -0.15
CSPG4-201ENST00000308508 PRG2P13727 222 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 TAF13Q15543 124 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 CXXC5Q7LFL8 322 aaKnown RBP14.13□□□□□ -0.15
CSPG4-201ENST00000308508 FBXW8Q8N3Y1 598 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 PIGBQ92521 554 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 TAS2R13Q9NYV9 303 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 NLRP1Q9C000 1473 aa14.13□□□□□ -0.15
CSPG4-201ENST00000308508 MED14O60244 1454 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 GSAPA4D1B5 854 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 PTAR1Q7Z6K3 402 aaPredicted RBP14.12□□□□□ -0.15
CSPG4-201ENST00000308508 SLC38A2Q96QD8 506 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 MCUBQ9NWR8 336 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 TPD52L2O43399 206 aaKnown RBP14.12□□□□□ -0.15
CSPG4-201ENST00000308508 OR6A2O95222 327 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 MAP3K6O95382 1288 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 SMYD1Q8NB12 490 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 PGM2Q96G03 612 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 ABI2Q9NYB9 513 aaPredicted RBP14.12□□□□□ -0.15
CSPG4-201ENST00000308508 RAPGEFL1Q9UHV5 662 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 CORO2BQ9UQ03 480 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 RPN2P04844 631 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 MYL9P24844 172 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 MTMR2Q13614 643 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 NT5DC4Q86YG4 428 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 IKZF3Q9UKT9 509 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 ERBB3P21860 1342 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 HBP1O60381 514 aa14.12□□□□□ -0.15
CSPG4-201ENST00000308508 RNF148Q8N7C7 305 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms