RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 GRIA2P42262 883 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 GEMP55040 296 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 GABARAPL2P60520 117 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ARF3P61204 181 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ATP6V0D1P61421 351 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 HERVK_113P62684 666 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ARF1P84077 181 aaKnown RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ZNF829Q3KNS6 432 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 TRAPPC3LQ5T215 181 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 DDX53Q86TM3 631 aaKnown RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 CCDC103Q8IW40 242 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 EID3Q8N140 333 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 DHRSXQ8N5I4 330 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 APOL6Q9BWW8 343 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ADNPQ9H2P0 1102 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 SPAG4Q9NPE6 437 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 PCDHA6Q9UN73 950 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 PCDHA8Q9Y5H6 950 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ZNF638Q14966 1978 aaKnown RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 SCN8AQ9UQD0 1980 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 RGS20O76081 388 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 FARP2O94887 1054 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 TGM6O95932 706 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 HMGCRP04035 888 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 GLI1P08151 1106 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 DLATP10515 647 aaKnown RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 MCAMP43121 646 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 CCNHP51946 323 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ARPP19P56211 112 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 NDUFAF6Q330K2 333 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 PABPC1LQ4VXU2 614 aaKnown RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 HSD17B12Q53GQ0 312 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 FASTKD1Q53R41 847 aaKnown RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 CYP4Z1Q86W10 505 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 PHF13Q86YI8 300 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 CYP4Z2PQ8N1L4 340 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 UBE2J2Q8N2K1 259 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 GLB1L3Q8NCI6 653 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ELMO2Q96JJ3 720 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 TMEM47Q9BQJ4 181 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ZNF670Q9BS34 389 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ARMC7Q9H6L4 198 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 CATSPERBQ9H7T0 1116 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 RPF1Q9H9Y2 349 aaKnown RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 KCNMB3Q9NPA1 279 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ZDHHC7Q9NXF8 308 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 SLAIN2Q9P270 581 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 TMEM59LQ9UK28 342 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 CLDN25C9JDP6 229 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 FCHO1O14526 889 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 CYP11B2P19099 503 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 GYS2P54840 703 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 RBP5P82980 135 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 TSNQ15631 228 aaKnown RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ZNF699Q32M78 642 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ZBTB49Q6ZSB9 765 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ADCK2Q7Z695 626 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 TBC1D10CQ8IV04 446 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 PLEKHO2Q8TD55 490 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 SLC20A1Q8WUM9 679 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 REPS1Q96D71 796 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 PAFAH2Q99487 392 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 CPNE5Q9HCH3 593 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 NDFIP2Q9NV92 336 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 TBC1D13Q9NVG8 400 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 THUMPD1Q9NXG2 353 aaKnown RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 HMGXB4Q9UGU5 601 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 GRIP1Q9Y3R0 1128 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 FRMPD2Q68DX3 1309 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 CABYRO75952 493 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 HPRP00739 348 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 TIE1P35590 1138 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 PIK3CBP42338 1070 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 AUHQ13825 339 aaKnown RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 Q3C1V9 767 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 METTL2BQ6P1Q9 378 aaKnown RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 RIOX1Q9H6W3 641 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 NMRAL1Q9HBL8 299 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ING4Q9UNL4 249 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 CFL2Q9Y281 166 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 MYPNQ86TC9 1320 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 COL5A2P05997 1499 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 MYO5BQ9ULV0 1848 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 NFICP08651 508 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 WARSP23381 471 aaKnown RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 TMBIM6P55061 237 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 SCRN3Q0VDG4 424 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 NIPAL1Q6NVV3 410 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 BAIAP2L2Q6UXY1 529 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 HACD2Q6Y1H2 254 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 BRINP3Q76B58 766 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 SMYD4Q8IYR2 804 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 PGAM4Q8N0Y7 254 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 UBE2E3Q969T4 207 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 KLF6Q99612 283 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-201ENST00000303395 TEX13BQ9BXU2 312 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 ASB7Q9H672 318 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 SUGCTQ9HAC7 445 aa5.35□□□□□ -1.55
SCN1A-201ENST00000303395 EIF3LQ9Y262 564 aaKnown RBP5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms