RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 SNX10Q9Y5X0 201 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 SNX9Q9Y5X1 595 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 TLL2Q9Y6L7 1015 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 RPS6KL1Q9Y6S9 549 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.34□□□□□ -0.27
SNX1-201ENST00000261889 FAM189A1O60320 539 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 RALBP11234 206 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 P4HA1P13674 534 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 NME3Q13232 169 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 GPR162Q16538 588 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 ATF7IP2Q5U623 682 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 SLC9A4Q6AI14 798 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 WDR49Q8IV35 697 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 CCNYL1Q8N7R7 359 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 UBR7Q8N806 425 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 OR52K1Q8NGK4 314 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 GSDMBQ8TAX9 411 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 MFSD3Q96ES6 412 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 DCUN1D5Q9BTE7 237 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 MRPL4Q9BYD3 311 aaKnown RBP13.34□□□□□ -0.27
SNX1-201ENST00000261889 PTPRHQ9HD43 1115 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 ADARB2Q9NS39 739 aaKnown RBP13.34□□□□□ -0.27
SNX1-201ENST00000261889 ASNSD1Q9NWL6 643 aa13.34□□□□□ -0.27
SNX1-201ENST00000261889 OGTO15294 1046 aa13.33□□□□□ -0.28
SNX1-201ENST00000261889 PLK1P53350 603 aa13.33□□□□□ -0.28
SNX1-201ENST00000261889 NIPA1Q7RTP0 329 aa13.33□□□□□ -0.28
SNX1-201ENST00000261889 RNF135Q8IUD6 432 aa13.33□□□□□ -0.28
SNX1-201ENST00000261889 LILRA2Q8N149 483 aa13.33□□□□□ -0.28
SNX1-201ENST00000261889 BHLHE22Q8NFJ8 381 aaPredicted RBP13.33□□□□□ -0.28
SNX1-201ENST00000261889 USP33Q8TEY7 942 aa13.33□□□□□ -0.28
SNX1-201ENST00000261889 ANKRD27Q96NW4 1050 aa13.33□□□□□ -0.28
SNX1-201ENST00000261889 EBNA1BP2Q99848 306 aaKnown RBP13.33□□□□□ -0.28
SNX1-201ENST00000261889 MRPL1Q9BYD6 325 aaKnown RBP13.33□□□□□ -0.28
SNX1-201ENST00000261889 PAK5Q9P286 719 aa13.33□□□□□ -0.28
SNX1-201ENST00000261889 RLFQ13129 1914 aa13.33□□□□□ -0.28
SNX1-201ENST00000261889 H3BNX3 289 aa13.33□□□□□ -0.28
SNX1-201ENST00000261889 PLIN3O60664 434 aa13.33□□□□□ -0.28
SNX1-201ENST00000261889 HNRNPCL1O60812 293 aaKnown RBP13.33□□□□□ -0.28
SNX1-201ENST00000261889 ZNF618Q5T7W0 954 aa13.33□□□□□ -0.28
SNX1-201ENST00000261889 PACS1Q6VY07 963 aa13.33□□□□□ -0.28
SNX1-201ENST00000261889 HSPBAP1Q96EW2 488 aa13.33□□□□□ -0.28
SNX1-201ENST00000261889 TMEM176AQ96HP8 235 aa13.33□□□□□ -0.28
SNX1-201ENST00000261889 TUBB6Q9BUF5 446 aa13.33□□□□□ -0.28
SNX1-201ENST00000261889 MMADHCQ9H3L0 296 aaPredicted RBP13.33□□□□□ -0.28
SNX1-201ENST00000261889 IL1RL2Q9HB29 575 aa13.33□□□□□ -0.28
SNX1-201ENST00000261889 SSU72Q9NP77 194 aaKnown RBP13.33□□□□□ -0.28
SNX1-201ENST00000261889 DMAP1Q9NPF5 467 aaPredicted RBP13.33□□□□□ -0.28
SNX1-201ENST00000261889 NEMP2A6NFY4 417 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 C2CD4BA6NLJ0 364 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 SNNO75324 88 aaPredicted RBP13.32□□□□□ -0.28
SNX1-201ENST00000261889 GABBR2O75899 941 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 LSM8O95777 96 aaKnown RBP13.32□□□□□ -0.28
SNX1-201ENST00000261889 PRKCGP05129 697 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 ITGA2BP08514 1039 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 SRGAP2BP0DMP2 458 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 COX4I1P13073 169 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 DPP6P42658 865 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 MYLK3Q32MK0 819 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 LGSNQ5TDP6 509 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 KLHDC10Q6PID8 442 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 FAM81AQ8TBF8 368 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 ZNF669Q96BR6 464 aaPredicted RBP13.32□□□□□ -0.28
SNX1-201ENST00000261889 HPDLQ96IR7 371 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 MRPL45Q9BRJ2 306 aaKnown RBP13.32□□□□□ -0.28
SNX1-201ENST00000261889 CDT1Q9H211 546 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 ANKRD33BA6NCL7 494 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 CLIC3O95833 236 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 CLPTM1O96005 669 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 LDHAP00338 332 aaKnown RBP13.32□□□□□ -0.28
SNX1-201ENST00000261889 UGT1A6P19224 532 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 IGFBP6P24592 240 aaPredicted RBP13.32□□□□□ -0.28
SNX1-201ENST00000261889 SDC4P31431 198 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 HDAC4P56524 1084 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 FLOT2Q14254 428 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 HEATR6Q6AI08 1181 aaKnown RBP13.32□□□□□ -0.28
SNX1-201ENST00000261889 USP50Q70EL3 339 aaPredicted RBP13.32□□□□□ -0.28
SNX1-201ENST00000261889 NAT16Q8N8M0 369 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 DNAAF3Q8N9W5 541 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 ZFP28Q8NHY6 868 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 GPRASP2Q96D09 838 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 FCRL3Q96P31 734 aaPredicted RBP13.32□□□□□ -0.28
SNX1-201ENST00000261889 DEFB129Q9H1M3 183 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 RPF1Q9H9Y2 349 aaKnown RBP13.32□□□□□ -0.28
SNX1-201ENST00000261889 CYP4F12Q9HCS2 524 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 ADA2Q9NZK5 511 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 CPSF3Q9UKF6 684 aaKnown RBP13.32□□□□□ -0.28
SNX1-201ENST00000261889 CNTN6Q9UQ52 1028 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 PPP2R3BQ9Y5P8 575 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 AP4B1Q9Y6B7 739 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 ZNF143P52747 638 aaPredicted RBP13.32□□□□□ -0.28
SNX1-201ENST00000261889 CHN2P52757 468 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 ACAD11Q709F0 780 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 TTC30AQ86WT1 665 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 FBXO16Q8IX29 292 aaPredicted RBP13.32□□□□□ -0.28
SNX1-201ENST00000261889 COLGALT1Q8NBJ5 622 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 SCYL1Q96KG9 808 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 PKP2Q99959 881 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 ATXN3LQ9H3M9 355 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 NRDE2Q9H7Z3 1164 aa13.32□□□□□ -0.28
SNX1-201ENST00000261889 SLC39A10Q9ULF5 831 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms