RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 KCNA1Q09470 495 aa13.33□□□□□ -0.28
MSH2-201ENST00000233146 VPS72Q15906 364 aa13.33□□□□□ -0.28
MSH2-201ENST00000233146 KIAA0408Q6ZU52 694 aa13.33□□□□□ -0.28
MSH2-201ENST00000233146 DSELQ8IZU8 1212 aa13.33□□□□□ -0.28
MSH2-201ENST00000233146 RAB2BQ8WUD1 216 aa13.33□□□□□ -0.28
MSH2-201ENST00000233146 CHAC2Q8WUX2 184 aa13.33□□□□□ -0.28
MSH2-201ENST00000233146 LRTOMTQ8WZ04 291 aa13.33□□□□□ -0.28
MSH2-201ENST00000233146 ATP6V1E2Q96A05 226 aa13.33□□□□□ -0.28
MSH2-201ENST00000233146 MAP6Q96JE9 813 aa13.33□□□□□ -0.28
MSH2-201ENST00000233146 CDHR1Q96JP9 859 aa13.33□□□□□ -0.28
MSH2-201ENST00000233146 CSF3RQ99062 836 aa13.33□□□□□ -0.28
MSH2-201ENST00000233146 EFHD1Q9BUP0 239 aa13.33□□□□□ -0.28
MSH2-201ENST00000233146 EIF3LQ9Y262 564 aaKnown RBP13.33□□□□□ -0.28
MSH2-201ENST00000233146 DRG1Q9Y295 367 aaKnown RBP13.33□□□□□ -0.28
MSH2-201ENST00000233146 AFG3L2Q9Y4W6 797 aa13.33□□□□□ -0.28
MSH2-201ENST00000233146 TAF1LQ8IZX4 1826 aa13.33□□□□□ -0.28
MSH2-201ENST00000233146 TRIM49D1C9J1S8 452 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 ZBTB14O43829 449 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 CPNE6O95741 557 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 ME2P23368 584 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 IL32P24001 234 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 NUDT2P50583 147 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 PRKAA2P54646 552 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 TRIM28Q13263 835 aaKnown RBP13.32□□□□□ -0.28
MSH2-201ENST00000233146 CARTPTQ16568 116 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 TEDDM1Q5T9Z0 273 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 KIAA1841Q6NSI8 718 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 S100ZQ8WXG8 99 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 GJA10Q969M2 543 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 SNX18Q96RF0 628 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 RUSC1Q9BVN2 902 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 ABI2Q9NYB9 513 aaPredicted RBP13.32□□□□□ -0.28
MSH2-201ENST00000233146 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.32□□□□□ -0.28
MSH2-201ENST00000233146 POTEB3A0JP26 581 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 H0YIN7 160 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 ZNF195O14628 629 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 LYPLA1O75608 230 aaPredicted RBP13.32□□□□□ -0.28
MSH2-201ENST00000233146 CCDC159P0C7I6 412 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 TRIM49P0CI25 452 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 TRIM49CP0CI26 452 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 EEF1DP29692 281 aaKnown RBP13.32□□□□□ -0.28
MSH2-201ENST00000233146 SSTR3P32745 418 aaPredicted RBP13.32□□□□□ -0.28
MSH2-201ENST00000233146 DYNLL1P63167 89 aaKnown RBP13.32□□□□□ -0.28
MSH2-201ENST00000233146 BASP1P80723 227 aaKnown RBP13.32□□□□□ -0.28
MSH2-201ENST00000233146 CLCQ05315 142 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 TNK2Q07912 1038 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 SELPLGQ14242 412 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 TTC39BQ5VTQ0 682 aaPredicted RBP13.32□□□□□ -0.28
MSH2-201ENST00000233146 POTEBQ6S5H4 581 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 ADAMTSL2Q86TH1 951 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 ARHGEF19Q8IW93 802 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 ZBTB38Q8NAP3 1195 aaPredicted RBP13.32□□□□□ -0.28
MSH2-201ENST00000233146 KYQ8NBH2 561 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 FNIP1Q8TF40 1166 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 VPS33AQ96AX1 596 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 NGLY1Q96IV0 654 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 MTG1Q9BT17 334 aaPredicted RBP13.32□□□□□ -0.28
MSH2-201ENST00000233146 SLC4A5Q9BY07 1137 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 FAM96AQ9H5X1 160 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 SP140LQ9H930 580 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.32□□□□□ -0.282e-6■□□□□ 10.6
MSH2-201ENST00000233146 UBA2Q9UBT2 640 aaPredicted RBP13.32□□□□□ -0.28
MSH2-201ENST00000233146 PCDHAC2Q9Y5I4 1007 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 MAU2Q9Y6X3 613 aa13.32□□□□□ -0.28
MSH2-201ENST00000233146 AIM2O14862 343 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 SNPHO15079 494 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 GPC4O75487 556 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 RFPL2O75678 378 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 CSPG5O95196 566 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 PHKG2P15735 406 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 FGFR3P22607 806 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 CASP3P42574 277 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 PKNOX1P55347 436 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 HERC3Q15034 1050 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 NFIL3Q16649 462 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 ANKRD22Q5VYY1 191 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 LINC00299Q6ZSB3 139 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 PCGF5Q86SE9 256 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 PARP8Q8N3A8 854 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 VWA5AO00534 786 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 SEC14L2O76054 403 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 KCNQ4P56696 695 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 NEDD8Q15843 81 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 MTX3Q5HYI7 312 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 ZCCHC8Q6NZY4 707 aaKnown RBP13.31□□□□□ -0.28
MSH2-201ENST00000233146 KATNAL2Q8IYT4 538 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 SYNE4Q8N205 404 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 SLC4A11Q8NBS3 891 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 FIG4Q92562 907 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 VMP1Q96GC9 406 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 GLT1D1Q96MS3 346 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 LENG8Q96PV6 779 aaPredicted RBP13.31□□□□□ -0.28
MSH2-201ENST00000233146 IL12RB2Q99665 862 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 PCDH9Q9HC56 1237 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 TANC1Q9C0D5 1861 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 TCRBV9S1A1TA0A576 114 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 GOLGA8IPA6NC78 632 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 ZW10O43264 779 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 RFPL1O75677 317 aa13.31□□□□□ -0.28
MSH2-201ENST00000233146 IL18RAPO95256 599 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms