RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 BBS2Q9BXC9 721 aa28.1■■■□□ 2.09
CHMP4B-201ENST00000217402 TYW5A2RUC4 315 aaKnown RBP28.1■■■□□ 2.09
CHMP4B-201ENST00000217402 OTOL1A6NHN0 477 aaPredicted RBP28.1■■■□□ 2.09
CHMP4B-201ENST00000217402 C3orf70A6NLC5 250 aaPredicted RBP28.1■■■□□ 2.09
CHMP4B-201ENST00000217402 ZRANB2O95218 330 aaKnown RBP eCLIP28.1■■■□□ 2.09
CHMP4B-201ENST00000217402 ADH1CP00326 375 aa28.1■■■□□ 2.09
CHMP4B-201ENST00000217402 ZNF211Q13398 564 aaPredicted RBP28.1■■■□□ 2.09
CHMP4B-201ENST00000217402 LLGL1Q15334 1064 aa28.1■■■□□ 2.09
CHMP4B-201ENST00000217402 NYAP1Q6ZVC0 841 aa28.1■■■□□ 2.09
CHMP4B-201ENST00000217402 CPA6Q8N4T0 437 aa28.1■■■□□ 2.09
CHMP4B-201ENST00000217402 EXD1Q8NHP7 514 aa28.1■■■□□ 2.09
CHMP4B-201ENST00000217402 FAM71BQ8TC56 605 aa28.1■■■□□ 2.09
CHMP4B-201ENST00000217402 TSC1Q92574 1164 aa28.1■■■□□ 2.09
CHMP4B-201ENST00000217402 CSPG4P5Q96PW8 444 aa28.1■■■□□ 2.09
CHMP4B-201ENST00000217402 ZYG11BQ9C0D3 744 aa28.1■■■□□ 2.09
CHMP4B-201ENST00000217402 ECT2Q9H8V3 914 aa28.1■■■□□ 2.09
CHMP4B-201ENST00000217402 IGLV3-10A0A075B6K4 115 aa28.09■■■□□ 2.09
CHMP4B-201ENST00000217402 ARNTLO00327 626 aa28.09■■■□□ 2.09
CHMP4B-201ENST00000217402 DAPK3O43293 454 aa28.09■■■□□ 2.09
CHMP4B-201ENST00000217402 NARSO43776 548 aaKnown RBP28.09■■■□□ 2.09
CHMP4B-201ENST00000217402 CNTN5O94779 1100 aa28.09■■■□□ 2.09
CHMP4B-201ENST00000217402 ADH5P11766 374 aa28.09■■■□□ 2.09
CHMP4B-201ENST00000217402 RUNX3Q13761 415 aa28.09■■■□□ 2.09
CHMP4B-201ENST00000217402 ALFQ53S48 1182 aa28.09■■■□□ 2.09
CHMP4B-201ENST00000217402 DCAF12L1Q5VU92 463 aa28.09■■■□□ 2.09
CHMP4B-201ENST00000217402 FYB2Q5VWT5 728 aa28.09■■■□□ 2.09
CHMP4B-201ENST00000217402 MFSD7Q6UXD7 560 aa28.09■■■□□ 2.09
CHMP4B-201ENST00000217402 TFAP2DQ7Z6R9 452 aa28.09■■■□□ 2.09
CHMP4B-201ENST00000217402 RBM41Q96IZ5 413 aaKnown RBP28.09■■■□□ 2.09
CHMP4B-201ENST00000217402 C19orf67A6NJJ6 358 aa28.08■■■□□ 2.09
CHMP4B-201ENST00000217402 DRGXA6NNA5 263 aa28.08■■■□□ 2.09
CHMP4B-201ENST00000217402 KCNK3O14649 394 aa28.08■■■□□ 2.09
CHMP4B-201ENST00000217402 TDGQ13569 410 aa28.08■■■□□ 2.09
CHMP4B-201ENST00000217402 AADACL2Q6P093 401 aa28.08■■■□□ 2.09
CHMP4B-201ENST00000217402 ANKS1BQ7Z6G8 1248 aa28.08■■■□□ 2.09
CHMP4B-201ENST00000217402 RCOR2Q8IZ40 523 aa28.08■■■□□ 2.09
CHMP4B-201ENST00000217402 ZNF670Q9BS34 389 aa28.08■■■□□ 2.09
CHMP4B-201ENST00000217402 PPARGC1AQ9UBK2 798 aaKnown RBP28.08■■■□□ 2.09
CHMP4B-201ENST00000217402 DNAI1Q9UI46 699 aa28.08■■■□□ 2.09
CHMP4B-201ENST00000217402 TCF20Q9UGU0 1960 aaKnown RBP28.08■■■□□ 2.09
CHMP4B-201ENST00000217402 FANCGO15287 622 aa28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 PYGMP11217 842 aa28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 TYRP14679 529 aa28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 IL4RP24394 825 aa28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 HOXD9P28356 352 aaPredicted RBP28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 ZNF135P52742 658 aaPredicted RBP28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 ETF1P62495 437 aaKnown RBP28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 C5orf22Q49AR2 442 aa28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 TTC39BQ5VTQ0 682 aaPredicted RBP28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 SYT10Q6XYQ8 523 aa28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 SPOCD1Q6ZMY3 1216 aa28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 UBE2Q2Q8WVN8 375 aa28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 HOXC13P31276 330 aa28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 HTR7P34969 479 aa28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 DPYSQ14117 519 aa28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 ANKRD20A8PQ5CZ79 823 aa28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 CSGALNACT1Q8TDX6 532 aa28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 NAPGQ99747 312 aaPredicted RBP28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 ARHGEF4Q9NR80 690 aa28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 MARK1Q9P0L2 795 aa28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 RCOR3Q9P2K3 495 aaPredicted RBP28.07■■■□□ 2.08
CHMP4B-201ENST00000217402 A0A1B0GVM2 712 aa28.06■■■□□ 2.08
CHMP4B-201ENST00000217402 TCAF2A6NFQ2 919 aa28.06■■■□□ 2.08
CHMP4B-201ENST00000217402 PENKP01210 267 aaPredicted RBP28.06■■■□□ 2.08
CHMP4B-201ENST00000217402 AMPD1P23109 780 aa28.06■■■□□ 2.08
CHMP4B-201ENST00000217402 CXCR5P32302 372 aa28.06■■■□□ 2.08
CHMP4B-201ENST00000217402 CDKN2BP42772 138 aa28.06■■■□□ 2.08
CHMP4B-201ENST00000217402 HCAR3P49019 387 aa28.06■■■□□ 2.08
CHMP4B-201ENST00000217402 GAD2Q05329 585 aa28.06■■■□□ 2.08
CHMP4B-201ENST00000217402 ITPRIPL2Q3MIP1 535 aa28.06■■■□□ 2.08
CHMP4B-201ENST00000217402 CARNMT1Q8N4J0 409 aa28.06■■■□□ 2.08
CHMP4B-201ENST00000217402 NAT16Q8N8M0 369 aa28.06■■■□□ 2.08
CHMP4B-201ENST00000217402 CTAGE9A4FU28 777 aa28.05■■■□□ 2.08
CHMP4B-201ENST00000217402 FGF10O15520 208 aaPredicted RBP28.05■■■□□ 2.08
CHMP4B-201ENST00000217402 RHOQP17081 205 aa28.05■■■□□ 2.08
CHMP4B-201ENST00000217402 ERCC2P18074 760 aa28.05■■■□□ 2.08
CHMP4B-201ENST00000217402 NR1H3Q13133 447 aa28.05■■■□□ 2.08
CHMP4B-201ENST00000217402 KAZNQ674X7 775 aa28.05■■■□□ 2.08
CHMP4B-201ENST00000217402 PHF6Q8IWS0 365 aaKnown RBP eCLIP28.05■■■□□ 2.08
CHMP4B-201ENST00000217402 PCDH19Q8TAB3 1148 aa28.05■■■□□ 2.08
CHMP4B-201ENST00000217402 CATSPERBQ9H7T0 1116 aa28.05■■■□□ 2.08
CHMP4B-201ENST00000217402 COL4A3Q01955 1670 aa28.05■■■□□ 2.08
CHMP4B-201ENST00000217402 HOXC11O43248 304 aaPredicted RBP28.04■■■□□ 2.08
CHMP4B-201ENST00000217402 KRT10P13645 584 aa28.04■■■□□ 2.08
CHMP4B-201ENST00000217402 CDH4P55283 916 aa28.04■■■□□ 2.08
CHMP4B-201ENST00000217402 TFDP3Q5H9I0 405 aa28.04■■■□□ 2.08
CHMP4B-201ENST00000217402 MPP7Q5T2T1 576 aa28.04■■■□□ 2.08
CHMP4B-201ENST00000217402 RFX6Q8HWS3 928 aa28.04■■■□□ 2.08
CHMP4B-201ENST00000217402 MFN1Q8IWA4 741 aa28.04■■■□□ 2.08
CHMP4B-201ENST00000217402 FAF2Q96CS3 445 aa28.04■■■□□ 2.08
CHMP4B-201ENST00000217402 NECAB3Q96P71 396 aaPredicted RBP28.04■■■□□ 2.08
CHMP4B-201ENST00000217402 CLEC4EQ9ULY5 219 aa28.04■■■□□ 2.08
CHMP4B-201ENST00000217402 MFHAS1Q9Y4C4 1052 aa28.04■■■□□ 2.08
CHMP4B-201ENST00000217402 CLDN11O75508 207 aa28.03■■■□□ 2.08
CHMP4B-201ENST00000217402 LUC7L3O95232 432 aaKnown RBP28.03■■■□□ 2.08
CHMP4B-201ENST00000217402 SRFP11831 508 aa28.03■■■□□ 2.08
CHMP4B-201ENST00000217402 SOX9P48436 509 aa28.03■■■□□ 2.08
CHMP4B-201ENST00000217402 CDH18Q13634 790 aa28.03■■■□□ 2.08
CHMP4B-201ENST00000217402 CHST9Q7L1S5 443 aa28.03■■■□□ 2.08
CHMP4B-201ENST00000217402 NLRP14Q86W24 1093 aa28.03■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms