RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 COPG2Q9UBF2 871 aa13.84□□□□□ -0.19
SF3A1-201ENST00000215793 CPA4Q9UI42 421 aa13.84□□□□□ -0.19
SF3A1-201ENST00000215793 LACTBL1A8MY62 500 aa13.84□□□□□ -0.19
SF3A1-201ENST00000215793 ERVK-10P10266 1014 aa13.84□□□□□ -0.19
SF3A1-201ENST00000215793 PLD1Q13393 1074 aa13.84□□□□□ -0.19
SF3A1-201ENST00000215793 LENG9Q96B70 501 aa13.84□□□□□ -0.19
SF3A1-201ENST00000215793 MRPL9Q9BYD2 267 aaKnown RBP13.84□□□□□ -0.19
SF3A1-201ENST00000215793 CEP41Q9BYV8 373 aa13.84□□□□□ -0.19
SF3A1-201ENST00000215793 LRCH1Q9Y2L9 728 aa13.84□□□□□ -0.19
SF3A1-201ENST00000215793 TRIM24O15164 1050 aa13.84□□□□□ -0.19
SF3A1-201ENST00000215793 WBP4O75554 376 aaKnown RBP13.84□□□□□ -0.19
SF3A1-201ENST00000215793 CLTBP09497 229 aa13.84□□□□□ -0.19
SF3A1-201ENST00000215793 OR56A5P0C7T3 313 aa13.84□□□□□ -0.19
SF3A1-201ENST00000215793 PABPC1P11940 636 aaKnown RBP13.84□□□□□ -0.19
SF3A1-201ENST00000215793 AKAP5P24588 427 aa13.84□□□□□ -0.19
SF3A1-201ENST00000215793 HDDC2Q7Z4H3 204 aa13.84□□□□□ -0.19
SF3A1-201ENST00000215793 ZSWIM2Q8NEG5 633 aa13.84□□□□□ -0.19
SF3A1-201ENST00000215793 SPPL2AQ8TCT8 520 aa13.84□□□□□ -0.19
SF3A1-201ENST00000215793 UGT2B28Q9BY64 529 aa13.84□□□□□ -0.19
SF3A1-201ENST00000215793 KLHL20Q9Y2M5 609 aa13.84□□□□□ -0.19
SF3A1-201ENST00000215793 INPP4BO15327 924 aa13.83□□□□□ -0.19
SF3A1-201ENST00000215793 KATNA1O75449 491 aa13.83□□□□□ -0.19
SF3A1-201ENST00000215793 STAU1O95793 577 aaKnown RBP13.83□□□□□ -0.19
SF3A1-201ENST00000215793 TUFMP49411 452 aaKnown RBP13.83□□□□□ -0.19
SF3A1-201ENST00000215793 SLC12A3P55017 1021 aa13.83□□□□□ -0.19
SF3A1-201ENST00000215793 PLCL1Q15111 1095 aa13.83□□□□□ -0.19
SF3A1-201ENST00000215793 SAMD4BQ5PRF9 694 aaKnown RBP13.83□□□□□ -0.19
SF3A1-201ENST00000215793 TMEM26Q6ZUK4 368 aa13.83□□□□□ -0.19
SF3A1-201ENST00000215793 CREG2Q8IUH2 290 aa13.83□□□□□ -0.19
SF3A1-201ENST00000215793 SETD9Q8NE22 299 aa13.83□□□□□ -0.19
SF3A1-201ENST00000215793 STARD8Q92502 1023 aa13.83□□□□□ -0.19
SF3A1-201ENST00000215793 ZNF75CPQ92670 426 aaPredicted RBP13.83□□□□□ -0.19
SF3A1-201ENST00000215793 DEPDC7Q96QD5 511 aa13.83□□□□□ -0.19
SF3A1-201ENST00000215793 A1CFQ9NQ94 594 aaKnown RBP13.83□□□□□ -0.19
SF3A1-201ENST00000215793 RABGEF1Q9UJ41 708 aa13.83□□□□□ -0.19
SF3A1-201ENST00000215793 AP3M1Q9Y2T2 418 aa13.83□□□□□ -0.19
SF3A1-201ENST00000215793 TK2O00142 265 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 LTFP02788 710 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 CKBP12277 381 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 AKR1A1P14550 325 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 CYP2C18P33260 490 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 PARP6Q2NL67 630 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 SNX30Q5VWJ9 437 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 UNC93AQ86WB7 457 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 SVOPQ8N4V2 548 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 MAML3Q96JK9 1138 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 TBL1YQ9BQ87 522 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 ROGDIQ9GZN7 287 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 PDZK1P1A8MUH7 402 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 ATP9AO75110 1047 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 IGSF6O95976 241 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 CASP7P55210 303 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 DPYSL3Q14195 570 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 LRRC38Q5VT99 294 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 C3orf67Q6ZVT6 689 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 TRMT11Q7Z4G4 463 aaKnown RBP13.83□□□□□ -0.2
SF3A1-201ENST00000215793 REPS1Q96D71 796 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 SEPHS2Q99611 448 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 CCDC3Q9BQI4 270 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 TMEM134Q9H6X4 195 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 MYL4P12829 197 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 CDH8P55286 799 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 FAAP100Q0VG06 881 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 ATAD3BQ5T9A4 648 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 MILR1Q7Z6M3 343 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 STK40Q8N2I9 435 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 FIG4Q92562 907 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 RMND5BQ96G75 393 aaPredicted RBP13.83□□□□□ -0.2
SF3A1-201ENST00000215793 APBA2Q99767 749 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 MTFR1LQ9H019 292 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 KLHL3Q9UH77 587 aa13.83□□□□□ -0.2
SF3A1-201ENST00000215793 PDHXO00330 501 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 CLOCKO15516 846 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 MFSD10Q14728 455 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 DDR2Q16832 855 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 FAM171A1Q5VUB5 890 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 SH3RF1Q7Z6J0 888 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 ZNF557Q8N988 423 aaPredicted RBP13.82□□□□□ -0.2
SF3A1-201ENST00000215793 HDAC7Q8WUI4 952 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 UXTQ9UBK9 157 aaPredicted RBP13.82□□□□□ -0.2
SF3A1-201ENST00000215793 AK9Q5TCS8 1911 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 CCDC154A6NI56 674 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 EML1O00423 815 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 ZNF862O60290 1169 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 ATG7O95352 703 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 ETS1P14921 441 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 IFI35P80217 286 aaPredicted RBP13.82□□□□□ -0.2
SF3A1-201ENST00000215793 GLT6D1Q7Z4J2 308 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 UTP15Q8TED0 518 aaKnown RBP13.82□□□□□ -0.2
SF3A1-201ENST00000215793 TRPC4APQ8TEL6 797 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 C19orf60Q96EN9 201 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 E5RJQ4 531 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 SEC22BO75396 215 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 FAM153BP0C7A2 387 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 FKBP1AP62942 108 aaKnown RBP13.82□□□□□ -0.2
SF3A1-201ENST00000215793 PPATQ06203 517 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 FRG1Q14331 258 aaKnown RBP13.82□□□□□ -0.2
SF3A1-201ENST00000215793 FAM153CQ494X1 144 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 CBWD6Q4V339 395 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 PLEKHA7Q6IQ23 1121 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms