RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 SLC44A2Q8IWA5 706 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 PSMA8Q8TAA3 256 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ETNPPLQ8TBG4 499 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 TNIP3Q96KP6 325 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ERMAPQ96PL5 475 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 PPME1Q9Y570 386 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 LOC100653049A0A140TA62 436 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 TFECO14948 347 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ERCC2P18074 760 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 RGS4P49798 205 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF45Q02386 682 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 KHDRBS2Q5VWX1 349 aaKnown RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 OTOAQ7RTW8 1153 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 MARVELD2Q8N4S9 558 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 KCTD15Q96SI1 283 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 SPATA2Q9UM82 520 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 AGPSO00116 658 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 CTDNEP1O95476 244 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ECDO95905 644 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 GCP02774 474 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 RALAP11233 206 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 PPIBP23284 216 aaKnown RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 HALP42357 657 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 PSMD4P55036 377 aaKnown RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 AP1S2P56377 157 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 SLC12A1Q13621 1099 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ADGRE1Q14246 886 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 TMEM44Q2T9K0 475 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 DENND1BQ6P3S1 775 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ANKMY2Q8IV38 441 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 UBASH3BQ8TF42 649 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 CLPBQ9H078 707 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 CHORDC1Q9UHD1 332 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 FAM220BPB1ANY3 271 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 E9PBE3 544 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 H7C2Y5 167 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 PROCP04070 461 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 CYP1A1P04798 512 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 COL6A2P12110 1019 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 PLEKHG6Q3KR16 790 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 SLFN13Q68D06 897 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 CCDC81Q6ZN84 652 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 FGD2Q7Z6J4 655 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ECHDC2Q86YB7 292 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 SUPT20HQ8NEM7 779 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 TMEM168Q9H0V1 697 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 SYTL2Q9HCH5 934 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 METP08581 1390 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 DHRS12A0PJE2 317 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 PROZP22891 400 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 HOXD12P35452 270 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 GCLMP48507 274 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 HSD17B4P51659 736 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 CDC42EP1Q00587 391 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 HSF2Q03933 536 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF699Q32M78 642 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ANGEL2Q5VTE6 544 aaKnown RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 CNSTQ6PJW8 725 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 FRMD7Q6ZUT3 714 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 BHLHE22Q8NFJ8 381 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 CREB3L1Q96BA8 519 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF496Q96IT1 587 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-220ENST00000641603 SNX9Q9Y5X1 595 aa4.77□□□□□ -1.65
SCN1A-220ENST00000641603 PAPSS1O43252 624 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 RNASEH1O60930 286 aaKnown RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 CFBP00751 764 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 APRTP07741 180 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 FCER1AP12319 257 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 POU1F1P28069 291 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 GPR107Q5VW38 600 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 HIPK1Q86Z02 1210 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 ACOT12Q8WYK0 555 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 GTPBP2Q9BX10 602 aaKnown RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 SENP6Q9GZR1 1112 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 LEF1Q9UJU2 399 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 MAGED1Q9Y5V3 778 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 FSCN2O14926 492 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 DENRO43583 198 aaKnown RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 RGS10O43665 173 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 NOL4O94818 638 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 MYL12AP19105 171 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 ATP6V1B2P21281 511 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 IFNGR2P38484 337 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 FOXM1Q08050 763 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 RNFT2Q96EX2 444 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 AS3MTQ9HBK9 375 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 LRRC4Q9HBW1 653 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 IL20Q9NYY1 176 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 CPSF3Q9UKF6 684 aaKnown RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 USP31Q70CQ4 1352 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 ASNSP08243 561 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 PHKA2P46019 1235 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 CAPZA2P47755 286 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 NPY2RP49146 381 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 CDH4P55283 916 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 IL5RAQ01344 420 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 PTPN21Q16825 1174 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 TMEM270Q6UE05 265 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 KBTBD7Q8WVZ9 684 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 NEDD4LQ96PU5 975 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms