RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 HEATR6Q6AI08 1181 aaKnown RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 POLNQ7Z5Q5 900 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 OXR1Q8N573 874 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 DCAKDQ8WVC6 231 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 RERGQ96A58 199 aaPredicted RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 MAGOHBQ96A72 148 aaKnown RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 MFSD14AQ96MC6 490 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 HNRNPABQ99729 332 aaKnown RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ADGRE3Q9BY15 652 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 MTFR1LQ9H019 292 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ZBTB3Q9H5J0 574 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 MRPL17Q9NRX2 175 aaKnown RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 CUEDC1Q9NWM3 386 aaPredicted RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 NCKIPSDQ9NZQ3 722 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 MAGED2Q9UNF1 606 aaPredicted RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 BAIAP2Q9UQB8 552 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 POLR1DQ9Y2S0 133 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 GIT1Q9Y2X7 761 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 NESP48681 1621 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ABCC12Q96J65 1359 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 KIAA1549Q9HCM3 1950 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 DFFAO00273 331 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 TERTO14746 1132 aaKnown RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 TSPAN4O14817 238 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 SGSM2O43147 1006 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 SSNA1O43805 119 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 PRPSAP2O60256 369 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 GLSO94925 669 aaPredicted RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 HRGP04196 525 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ASGR1P07306 291 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 CYP2A6P11509 494 aaPredicted RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 SSTP61278 116 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 CDH18Q13634 790 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 TSNQ15631 228 aaKnown RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 RNF43Q68DV7 783 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 LCORLQ8N3X6 602 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 CPA6Q8N4T0 437 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 RIN3Q8TB24 985 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 SLC5A5Q92911 643 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 APOPT1Q96IL0 206 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 PSTPIP2Q9H939 334 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 EHD3Q9NZN3 535 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 DAPK2Q9UIK4 370 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 NOVA2Q9UNW9 492 aaKnown RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 OVOS2A0A0G2JMS6 1433 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 OVOS2A0A0J9YW53 1432 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 OVOS2Q6IE36 1432 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 TRIM49BA6NDI0 452 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 CCDC182A6NF36 153 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 TRIM49D1C9J1S8 452 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 COPEO14579 308 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 USP1O94782 785 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 MARK3P27448 753 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 MAGOHP61326 146 aaKnown RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 CAV1Q03135 178 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 CERCAMQ5T4B2 595 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 MROH9Q5TGP6 573 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 USP50Q70EL3 339 aaPredicted RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ACOT1Q86TX2 421 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 LRRC8AQ8IWT6 810 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ARHGAP12Q8IWW6 846 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ANKRD7Q92527 254 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 HPS1Q92902 700 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ELMO2Q96JJ3 720 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 SPOCK3Q9BQ16 436 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 PCDHB16Q9NRJ7 776 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 POU2F3Q9UKI9 436 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ING4Q9UNL4 249 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 INPP5FQ9Y2H2 1132 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ZNF518AQ6AHZ1 1483 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ERCC6L2Q5T890 1561 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 SETD2Q9BYW2 2564 aaPredicted RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 GSAPA4D1B5 854 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 FAM47DPA6NHR8 397 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ARHGEF33A8MVX0 844 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 TLX3O43711 291 aaPredicted RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 CCDC22O60826 627 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 TJP3O95049 919 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 CALB1P05937 261 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ADH1AP07327 375 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 SDSP20132 328 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 ITGALP20701 1170 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 FEN1P39748 380 aaKnown RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 CENPAP49450 140 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 DR1Q01658 176 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 MC1RQ01726 317 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 DNAL1Q4LDG9 190 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 TSHZ3Q63HK5 1081 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 TXNDC8Q6A555 127 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 NRSN1Q8IZ57 195 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 CNTD1Q8N815 330 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 OTUB2Q96DC9 234 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 FAM89AQ96GI7 184 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 GAD1Q99259 594 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 C17orf80Q9BSJ5 609 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 COA1Q9GZY4 146 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 EXOSC4Q9NPD3 245 aaKnown RBP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP2.84□□□□□ -1.95
SCN1A-219ENST00000641575 PADI4Q9UM07 663 aa2.84□□□□□ -1.95
SCN1A-219ENST00000641575 WASF3Q9UPY6 502 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms