RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 KIAA1671Q9BY89 1806 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 ADAM33Q9BZ11 813 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 RAB6CQ9H0N0 254 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 NMUR1Q9HB89 426 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 TLR8Q9NR97 1041 aaKnown RBP12.09□□□□□ -0.47
VRK3-223ENST00000601341 DDIT4Q9NX09 232 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 CLIC5Q9NZA1 410 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 NINJ2Q9NZG7 142 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 MSRAQ9UJ68 235 aa12.09□□□□□ -0.47
VRK3-223ENST00000601341 C2orf71A6NGG8 1288 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 MDM4O15151 490 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 GRM6O15303 877 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 RASSF9O75901 435 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 ACSL3O95573 720 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 KDELR1P24390 212 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 CHKAP35790 457 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 EPHB3P54753 998 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 VCPP55072 806 aaKnown RBP12.08□□□□□ -0.48
VRK3-223ENST00000601341 PITX1P78337 314 aaPredicted RBP12.08□□□□□ -0.48
VRK3-223ENST00000601341 PLD1Q13393 1074 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 XRCC4Q13426 336 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 OASLQ15646 514 aaKnown RBP12.08□□□□□ -0.48
VRK3-223ENST00000601341 RAB30Q15771 203 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 TAZQ16635 292 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 OTUD1Q5VV17 481 aaPredicted RBP12.08□□□□□ -0.48
VRK3-223ENST00000601341 PLPP4Q5VZY2 271 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 PDE12Q6L8Q7 609 aaKnown RBP12.08□□□□□ -0.48
VRK3-223ENST00000601341 LILRA6Q6PI73 481 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 SPOCD1Q6ZMY3 1216 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 CYP4V2Q6ZWL3 525 aaPredicted RBP12.08□□□□□ -0.48
VRK3-223ENST00000601341 SPRED2Q7Z698 418 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 MAP7D3Q8IWC1 876 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 DQX1Q8TE96 717 aaKnown RBP12.08□□□□□ -0.48
VRK3-223ENST00000601341 ACSF2Q96CM8 615 aaPredicted RBP12.08□□□□□ -0.48
VRK3-223ENST00000601341 GRAMD1AQ96CP6 724 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 PCDH9Q9HC56 1237 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.08□□□□□ -0.48
VRK3-223ENST00000601341 KLHL11Q9NVR0 708 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.08□□□□□ -0.48
VRK3-223ENST00000601341 GMIPQ9P107 970 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 MAGED2Q9UNF1 606 aaPredicted RBP12.08□□□□□ -0.48
VRK3-223ENST00000601341 YBX2Q9Y2T7 364 aaKnown RBP12.08□□□□□ -0.48
VRK3-223ENST00000601341 INSL5Q9Y5Q6 135 aa12.08□□□□□ -0.48
VRK3-223ENST00000601341 hCG_1818297A0A087WSY0 165 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 SYNJ2BP-COX16A0A087WUM0 186 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 HIDE1A8MVS5 230 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 PI4K2BG5E9Z4 385 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 H3BNC9 293 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 GLUD1P00367 558 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 OAS1P00973 400 aaKnown RBP12.07□□□□□ -0.48
VRK3-223ENST00000601341 PBX2P40425 430 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 CDKN2BP42772 138 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 PGFP49763 221 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 ATXN1P54253 815 aaKnown RBP12.07□□□□□ -0.48
VRK3-223ENST00000601341 AIF1P55008 147 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 TWF1Q12792 350 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 CBLBQ13191 982 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 GPM6BQ13491 265 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 PDK2Q15119 407 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 KYNUQ16719 465 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 LONRF1Q17RB8 773 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 ZC3H12AQ5D1E8 599 aaKnown RBP12.07□□□□□ -0.48
VRK3-223ENST00000601341 MFSD7Q6UXD7 560 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 CCDC149Q6ZUS6 474 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 GSTA5Q7RTV2 222 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 FAM131BQ86XD5 332 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 PSTKQ8IV42 348 aaKnown RBP12.07□□□□□ -0.48
VRK3-223ENST00000601341 PDZD8Q8NEN9 1154 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 ADAM32Q8TC27 787 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 OVCA2Q8WZ82 227 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 MYRFLQ96LU7 910 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 RBM15Q96T37 977 aaKnown RBP eCLIP12.07□□□□□ -0.483e-6■■■■□ 20.8
VRK3-223ENST00000601341 PRMT1Q99873 361 aaKnown RBP12.07□□□□□ -0.48
VRK3-223ENST00000601341 SNRNP25Q9BV90 132 aaKnown RBP12.07□□□□□ -0.48
VRK3-223ENST00000601341 HEMGNQ9BXL5 484 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 PBX4Q9BYU1 374 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 PIGVQ9NUD9 493 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 COX16Q9P0S2 106 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 FBXW11Q9UKB1 542 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 TPX2Q9ULW0 747 aaKnown RBP12.07□□□□□ -0.48
VRK3-223ENST00000601341 PATJQ8NI35 1801 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 TMEM120BA0PK00 339 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 C3orf70A6NLC5 250 aaPredicted RBP12.07□□□□□ -0.48
VRK3-223ENST00000601341 SNX3O60493 162 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 C1RP00736 705 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 ZDHHC11BP0C7U3 371 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 SPATA31D3P0C874 917 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 TSHRP16473 764 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 HMGA1P17096 107 aaKnown RBP12.07□□□□□ -0.48
VRK3-223ENST00000601341 HNRNPH1P31943 449 aaKnown RBP12.07□□□□□ -0.48
VRK3-223ENST00000601341 BMP8BP34820 402 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 MAGEA4P43358 317 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 SLCO1A2P46721 670 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 CDH6P55285 790 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 ARL13BQ3SXY8 428 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 SWT1Q5T5J6 900 aaKnown RBP12.07□□□□□ -0.48
VRK3-223ENST00000601341 SPATA31D4Q6ZUB0 917 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 TAC4Q86UU9 113 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 ITIH5Q86UX2 942 aa12.07□□□□□ -0.48
VRK3-223ENST00000601341 KREMEN2Q8NCW0 462 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms