RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 CEP83Q9Y592 693 aa18.27■□□□□ 0.52
SHKBP1-223ENST00000600552 KNL1Q8NG31 2342 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 AKAP13Q12802 2813 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 BICDL2A1A5D9 508 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 TYW5A2RUC4 315 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 CAPN9O14815 690 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 FBXO21O94952 628 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 LETM1O95202 739 aaPredicted RBP18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 LATS1O95835 1130 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 DLDP09622 509 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 USP8P40818 1118 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 MATKP42679 507 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 ST8SIA6P61647 398 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 RPS14P62263 151 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 RPS24P62847 133 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 SLC14A1Q13336 389 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 PTPRNQ16849 979 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 HLA-BQ31612 363 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 FAM133BQ5BKY9 247 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 NADSYN1Q6IA69 706 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 HJURPQ8NCD3 748 aaPredicted RBP18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 LMO3Q8TAP4 145 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 DQX1Q8TE96 717 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 MYEOVQ96EZ4 313 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 HSFY1Q96LI6 401 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 KREMEN1Q96MU8 473 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 DDX50Q9BQ39 737 aaKnown RBP18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 ZDHHC5Q9C0B5 715 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 UBE2TQ9NPD8 197 aaPredicted RBP18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 SUN2Q9UH99 717 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 SLCO1B1Q9Y6L6 691 aa18.26■□□□□ 0.51
SHKBP1-223ENST00000600552 H0Y626 953 aa18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 KCNK3O14649 394 aa18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 GADD45BO75293 160 aaPredicted RBP18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 GJB3O75712 270 aa18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 TRIM16O95361 564 aa18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 SEMA4FO95754 770 aa18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 CER1O95813 267 aa18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 AFPP02771 609 aaKnown RBP18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 BMP6P22004 513 aa18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 PPP1R2P41236 205 aa18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 BNC1Q01954 994 aa18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 HNRNPDQ14103 355 aaKnown RBP18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 ZNF423Q2M1K9 1284 aa18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 LAYNQ6UX15 382 aa18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 MMS22LQ6ZRQ5 1243 aa18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 DHX40Q8IX18 779 aaKnown RBP18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 SCML4Q8N228 414 aa18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 KDF1Q8NAX2 398 aaPredicted RBP18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 FCRL2Q96LA5 508 aaPredicted RBP18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 TMEM121BQ9BXQ6 578 aaPredicted RBP18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 BTBD1Q9H0C5 482 aa18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 NUCKS1Q9H1E3 243 aaKnown RBP18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 FNDC3AQ9Y2H6 1198 aaKnown RBP18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 MSRB2Q9Y3D2 182 aa18.25■□□□□ 0.51
SHKBP1-223ENST00000600552 SYNJ2BP-COX16A0A087WUM0 186 aa18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 P4HA2O15460 535 aa18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 IGLV3-19P01714 112 aa18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 IGLV3-27P01718 113 aa18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 FYNP06241 537 aa18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 FTH1P19P0C7X4 201 aa18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 CSKP41240 450 aa18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 PAK1Q13153 545 aa18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 CDH18Q13634 790 aa18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 MORC3Q14149 939 aa18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 TTC31Q49AM3 519 aaPredicted RBP18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 CCDC157Q569K6 752 aa18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 SYPL2Q5VXT5 272 aa18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 ZNF776Q68DI1 518 aaPredicted RBP18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 LGI2Q8N0V4 545 aa18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 PRICKLE1Q96MT3 831 aaPredicted RBP18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 CRACR2AQ9BSW2 395 aa18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 ACP6Q9NPH0 428 aa18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 TM7SF3Q9NS93 570 aa18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 COX16Q9P0S2 106 aa18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 NCKAP1Q9Y2A7 1128 aa18.24■□□□□ 0.51
SHKBP1-223ENST00000600552 TMEM8BA6NDV4 472 aa18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 PMM2O15305 246 aa18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 IRAK2O43187 625 aa18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 THAP12O43422 761 aa18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 GNA14O95837 355 aa18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 CTSOP43234 321 aaPredicted RBP18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 GCNT1Q02742 428 aa18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 TEAD4Q15561 434 aa18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 ARHGAP44Q17R89 818 aa18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 KIF19Q2TAC6 998 aa18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 ZC3H12AQ5D1E8 599 aaKnown RBP18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 RAP1GAP2Q684P5 730 aa18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 GJB7Q6PEY0 223 aa18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 ADAT2Q7Z6V5 191 aaKnown RBP18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 KIAA0907Q7Z7F0 614 aaPredicted RBP18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 TAC4Q86UU9 113 aa18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 TRIM59Q8IWR1 403 aa18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 FIBINQ8TAL6 211 aa18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 RHBDD1Q8TEB9 315 aa18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 SERPINB11Q96P15 392 aa18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 XPO7Q9UIA9 1087 aaKnown RBP18.23■□□□□ 0.51
SHKBP1-223ENST00000600552 ZBTB32Q9Y2Y4 487 aaPredicted RBP18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms