RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 ACOX2Q99424 681 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 PRMT1Q99873 361 aaKnown RBP14.34□□□□□ -0.11
UPF1-205ENST00000598209 SELENOOQ9BVL4 669 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 WDCPQ9H6R7 721 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 ABCB8Q9NUT2 735 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 ARHGEF38Q9NXL2 777 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 TAS2R14Q9NYV8 317 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 CAPN11Q9UMQ6 739 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 DOCK4Q8N1I0 1966 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 ITIH6Q6UXX5 1313 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 CKAP5Q14008 2032 aa14.34□□□□□ -0.11
UPF1-205ENST00000598209 MUC22E2RYF6 1773 aaPredicted RBP14.33□□□□□ -0.12
UPF1-205ENST00000598209 CCDC163A0A0D9SF12 145 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 C2CD4BA6NLJ0 364 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 TMCO5BA8MYB1 307 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 AXIN1O15169 862 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 HRO43593 1189 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 GFRA3O60609 400 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 PAGE1O75459 146 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 ADCY5O95622 1261 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 LMNAP02545 664 aaKnown RBP14.33□□□□□ -0.12
UPF1-205ENST00000598209 GYPCP04921 128 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 PABPC1P11940 636 aaKnown RBP14.33□□□□□ -0.12
UPF1-205ENST00000598209 KRT3P12035 628 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 HOXB2P14652 356 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 PDGFRAP16234 1089 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 CNR2P34972 360 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 RDXP35241 583 aaKnown RBP14.33□□□□□ -0.12
UPF1-205ENST00000598209 ATXN1P54253 815 aaKnown RBP14.33□□□□□ -0.12
UPF1-205ENST00000598209 ZBED6P86452 979 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 ATP11AP98196 1134 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 SRSF5Q13243 272 aaKnown RBP14.33□□□□□ -0.12
UPF1-205ENST00000598209 EIF4HQ15056 248 aaKnown RBP14.33□□□□□ -0.12
UPF1-205ENST00000598209 TMEM215Q68D42 235 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 SDE2Q6IQ49 451 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 PPP1R2P3Q6NXS1 205 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 CHST9Q7L1S5 443 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 BNIPLQ7Z465 357 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 MCOLN2Q8IZK6 566 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 CARNMT1Q8N4J0 409 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.33□□□□□ -0.12
UPF1-205ENST00000598209 ZNF557Q8N988 423 aaPredicted RBP14.33□□□□□ -0.12
UPF1-205ENST00000598209 RXFP2Q8WXD0 754 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 CIPCQ9C0C6 399 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 TKTL2Q9H0I9 626 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 EPC1Q9H2F5 836 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 POLMQ9NP87 494 aaPredicted RBP14.33□□□□□ -0.12
UPF1-205ENST00000598209 TMEM51Q9NW97 253 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 ELOVL2Q9NXB9 296 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 CACNA2D2Q9NY47 1150 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 EBF1Q9UH73 591 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 GGA2Q9UJY4 613 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 LUC7L2Q9Y383 392 aaKnown RBP14.33□□□□□ -0.12
UPF1-205ENST00000598209 PAXBP1Q9Y5B6 917 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.33□□□□□ -0.127e-8■■□□□ 12.6
UPF1-205ENST00000598209 HS3ST4Q9Y661 456 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 VPS13AQ96RL7 3174 aa14.33□□□□□ -0.12
UPF1-205ENST00000598209 TCRBV5S1A1TA0A578 114 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 SIGLEC16A6NMB1 481 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 DDX3XO00571 662 aaKnown RBP eCLIP14.32□□□□□ -0.12
UPF1-205ENST00000598209 TIMM44O43615 452 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 ALDH1A2O94788 518 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 LUC7L3O95232 432 aaKnown RBP14.32□□□□□ -0.12
UPF1-205ENST00000598209 HOXD11P31277 338 aaPredicted RBP14.32□□□□□ -0.12
UPF1-205ENST00000598209 SDC4P31431 198 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 CD70P32970 193 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 GGCXP38435 758 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 CDH18Q13634 790 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 AUHQ13825 339 aaKnown RBP14.32□□□□□ -0.12
UPF1-205ENST00000598209 CDO1Q16878 200 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 C15orf59Q2T9L4 293 aaPredicted RBP14.32□□□□□ -0.12
UPF1-205ENST00000598209 CCDC14Q49A88 953 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 TDRD12Q587J7 1177 aaKnown RBP14.32□□□□□ -0.12
UPF1-205ENST00000598209 RABGAP1LQ5R372 815 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 ANO7Q6IWH7 933 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 FBXL22Q6P050 247 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 DNAJC24Q6P3W2 148 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 KIAA0907Q7Z7F0 614 aaPredicted RBP14.32□□□□□ -0.12
UPF1-205ENST00000598209 RASSF3Q86WH2 238 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 CCDC117Q8IWD4 279 aaPredicted RBP14.32□□□□□ -0.12
UPF1-205ENST00000598209 AHI1Q8N157 1196 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 SUMF1Q8NBK3 374 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 FIBINQ8TAL6 211 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 SORCS1Q8WY21 1168 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 SYN2Q92777 582 aaPredicted RBP14.32□□□□□ -0.12
UPF1-205ENST00000598209 GABRG3Q99928 467 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 SIK2Q9H0K1 926 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 ANLNQ9NQW6 1124 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 THAP10Q9P2Z0 257 aaPredicted RBP14.32□□□□□ -0.12
UPF1-205ENST00000598209 VANGL2Q9ULK5 521 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 SMG5Q9UPR3 1016 aaKnown RBP14.32□□□□□ -0.12
UPF1-205ENST00000598209 PLXND1Q9Y4D7 1925 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 RALGAPA1Q6GYQ0 2036 aa14.32□□□□□ -0.12
UPF1-205ENST00000598209 A0A1W2PQF6 199 aa14.31□□□□□ -0.12
UPF1-205ENST00000598209 TCRBV21S2A2A0A5A6 115 aa14.31□□□□□ -0.12
UPF1-205ENST00000598209 WASH3PC4AMC7 463 aa14.31□□□□□ -0.12
UPF1-205ENST00000598209 H0Y626 953 aa14.31□□□□□ -0.12
UPF1-205ENST00000598209 I6L893 689 aaPredicted RBP14.31□□□□□ -0.12
UPF1-205ENST00000598209 NPC1O15118 1278 aa14.31□□□□□ -0.12
UPF1-205ENST00000598209 ENDOD1O94919 500 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms