RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 TPRP12270 2363 aaKnown RBP13.01□□□□□ -0.33
UPF1-203ENST00000594504 LGALS16A8MUM7 142 aa13□□□□□ -0.33
UPF1-203ENST00000594504 O00370 1275 aa13□□□□□ -0.33
UPF1-203ENST00000594504 ATP1A3P13637 1013 aa13□□□□□ -0.33
UPF1-203ENST00000594504 GNSP15586 552 aa13□□□□□ -0.33
UPF1-203ENST00000594504 HARS2P49590 506 aaKnown RBP13□□□□□ -0.33
UPF1-203ENST00000594504 BNC1Q01954 994 aa13□□□□□ -0.33
UPF1-203ENST00000594504 ARID5AQ03989 594 aa13□□□□□ -0.33
UPF1-203ENST00000594504 GRIK2Q13002 908 aa13□□□□□ -0.33
UPF1-203ENST00000594504 STILQ15468 1287 aa13□□□□□ -0.33
UPF1-203ENST00000594504 ARHGAP44Q17R89 818 aa13□□□□□ -0.33
UPF1-203ENST00000594504 PKDCCQ504Y2 493 aa13□□□□□ -0.33
UPF1-203ENST00000594504 DPY19L2P1Q6NXN4 242 aa13□□□□□ -0.33
UPF1-203ENST00000594504 PMF1Q6P1K2 205 aa13□□□□□ -0.33
UPF1-203ENST00000594504 SERPINA13PQ6UXR4 307 aa13□□□□□ -0.33
UPF1-203ENST00000594504 CHST9Q7L1S5 443 aa13□□□□□ -0.33
UPF1-203ENST00000594504 PNPLA1Q8N8W4 532 aa13□□□□□ -0.33
UPF1-203ENST00000594504 WFDC5Q8TCV5 224 aa13□□□□□ -0.33
UPF1-203ENST00000594504 DNASE2BQ8WZ79 361 aa13□□□□□ -0.33
UPF1-203ENST00000594504 SHC3Q92529 594 aa13□□□□□ -0.33
UPF1-203ENST00000594504 SLC2A11Q9BYW1 496 aa13□□□□□ -0.33
UPF1-203ENST00000594504 MTG2Q9H4K7 406 aa13□□□□□ -0.33
UPF1-203ENST00000594504 CBX8Q9HC52 389 aa13□□□□□ -0.33
UPF1-203ENST00000594504 PLCB1Q9NQ66 1216 aa13□□□□□ -0.33
UPF1-203ENST00000594504 OLA1Q9NTK5 396 aaKnown RBP13□□□□□ -0.33
UPF1-203ENST00000594504 EIF2B4Q9UI10 523 aaKnown RBP13□□□□□ -0.33
UPF1-203ENST00000594504 DNAJC12Q9UKB3 198 aa13□□□□□ -0.33
UPF1-203ENST00000594504 SLCO1B1Q9Y6L6 691 aa13□□□□□ -0.33
UPF1-203ENST00000594504 MAP1BP46821 2468 aaKnown RBP13□□□□□ -0.33
UPF1-203ENST00000594504 KMT2BQ9UMN6 2715 aaPredicted RBP12.99□□□□□ -0.33
UPF1-203ENST00000594504 A0A1B0GTW7 788 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 NPC1O15118 1278 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 ACADMP11310 421 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 SLC6A4P31645 630 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 ACSL1P33121 698 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 DAOAP59103 153 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 TPM4P67936 248 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 TRIP6Q15654 476 aaKnown RBP12.99□□□□□ -0.33
UPF1-203ENST00000594504 CNGA2Q16280 664 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 FNDC3BQ53EP0 1204 aaKnown RBP12.99□□□□□ -0.33
UPF1-203ENST00000594504 KLHDC7AQ5VTJ3 777 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 RFWD3Q6PCD5 774 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 LCLAT1Q6UWP7 414 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 APTXQ7Z2E3 356 aaKnown RBP12.99□□□□□ -0.33
UPF1-203ENST00000594504 ADIPOR2Q86V24 386 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 SIX6OS1Q8N1H7 587 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 SLC35F5Q8WV83 523 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 KCTD13Q8WZ19 329 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 NUP58Q9BVL2 599 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 C6orf106Q9H6K1 298 aaPredicted RBP12.99□□□□□ -0.33
UPF1-203ENST00000594504 ABCC13Q9NSE7 274 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 ABCB8Q9NUT2 735 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 SUSD2Q9UGT4 822 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 STOML2Q9UJZ1 356 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.99□□□□□ -0.33
UPF1-203ENST00000594504 MSRB2Q9Y3D2 182 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 HBS1LQ9Y450 684 aaKnown RBP12.99□□□□□ -0.33
UPF1-203ENST00000594504 DAAM1Q9Y4D1 1078 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 NEUROG3Q9Y4Z2 214 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 PCDHB9Q9Y5E1 797 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 CKAP5Q14008 2032 aa12.99□□□□□ -0.33
UPF1-203ENST00000594504 SRRM3A6NNA2 597 aaPredicted RBP12.98□□□□□ -0.33
UPF1-203ENST00000594504 TIMM44O43615 452 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 TBL1XO60907 577 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 SETSIPP0DME0 302 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 UCHL3P15374 230 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 BRD2P25440 801 aaKnown RBP12.98□□□□□ -0.33
UPF1-203ENST00000594504 OXTRP30559 389 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 CD70P32970 193 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 USP8P40818 1118 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 UBXN1Q04323 297 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 EIF4HQ15056 248 aaKnown RBP12.98□□□□□ -0.33
UPF1-203ENST00000594504 MEA1Q16626 185 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 PTPRNQ16849 979 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 ADGRF1Q5T601 910 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 KIAA0907Q7Z7F0 614 aaPredicted RBP12.98□□□□□ -0.33
UPF1-203ENST00000594504 SLCO6A1Q86UG4 719 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 LUZP1Q86V48 1076 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 NAXDQ8IW45 347 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 CADM4Q8NFZ8 388 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 OR2T3Q8NH03 318 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 ZCCHC14Q8WYQ9 949 aaKnown RBP12.98□□□□□ -0.33
UPF1-203ENST00000594504 SNX19Q92543 992 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 MYEOVQ96EZ4 313 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 ERGIC2Q96RQ1 377 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 TMEM245Q9H330 911 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 GAREM1Q9H706 876 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 PRSS16Q9NQE7 514 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 STIM2Q9P246 746 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 GGA2Q9UJY4 613 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 AJAP1Q9UKB5 411 aaPredicted RBP12.98□□□□□ -0.33
UPF1-203ENST00000594504 PLA2G4CQ9UP65 541 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 SIK3Q9Y2K2 1263 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 FHOD1Q9Y613 1164 aa12.98□□□□□ -0.33
UPF1-203ENST00000594504 LAMA1P25391 3075 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 A0A1B0GVT2 93 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 GOLGA6L19H0YKK7 550 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 TAF4O00268 1085 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 KCNK3O14649 394 aa12.97□□□□□ -0.33
UPF1-203ENST00000594504 BCAT2O15382 392 aaPredicted RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms