RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 GRAP2O75791 330 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 ERBB2P04626 1255 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 DLDP09622 509 aaKnown RBP12.83□□□□□ -0.36
SS18-225ENST00000585121 SGSHP51688 502 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 LIMK1P53667 647 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 ST8SIA6P61647 398 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 ENPP2Q13822 863 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 TAF3Q5VWG9 929 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 TMEM215Q68D42 235 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 MBLAC2Q68D91 279 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 RNF43Q68DV7 783 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 NADSYN1Q6IA69 706 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 SLC26A9Q7LBE3 791 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 METTL3Q86U44 580 aaKnown RBP12.83□□□□□ -0.36
SS18-225ENST00000585121 ERICH1Q86X53 443 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 TMPRSS6Q8IU80 811 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 SYT12Q8IV01 421 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 LGI2Q8N0V4 545 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 FRMD1Q8N878 549 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 SORCS1Q8WY21 1168 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 PRCCQ92733 491 aaPredicted RBP12.83□□□□□ -0.36
SS18-225ENST00000585121 NAA15Q9BXJ9 866 aaKnown RBP12.83□□□□□ -0.36
SS18-225ENST00000585121 NUSAP1Q9BXS6 441 aaKnown RBP12.83□□□□□ -0.36
SS18-225ENST00000585121 NAT10Q9H0A0 1025 aaKnown RBP12.83□□□□□ -0.36
SS18-225ENST00000585121 NUCKS1Q9H1E3 243 aaKnown RBP12.83□□□□□ -0.36
SS18-225ENST00000585121 CD248Q9HCU0 757 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 TMEM51Q9NW97 253 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 COX16Q9P0S2 106 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 SUN2Q9UH99 717 aa12.83□□□□□ -0.36
SS18-225ENST00000585121 ABCA7Q8IZY2 2146 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 CACNA1AO00555 2505 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 RALGAPA1Q6GYQ0 2036 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 DCHS1Q96JQ0 3298 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 KCNU1A8MYU2 1149 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 DAB1O75553 588 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 LSM8O95777 96 aaKnown RBP12.82□□□□□ -0.36
SS18-225ENST00000585121 IGLV3-25P01717 112 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 ASLP04424 464 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 PTMSP20962 102 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 TACR2P21452 398 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 OXTRP30559 389 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 NOS2P35228 1153 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 HOXD12P35452 270 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 POLR2FP61218 127 aaKnown RBP12.82□□□□□ -0.36
SS18-225ENST00000585121 RPS24P62847 133 aaKnown RBP12.82□□□□□ -0.36
SS18-225ENST00000585121 NME3Q13232 169 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 PTPN20Q4JDL3 420 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 RABGAP1LQ5R372 815 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 SYCP2LQ5T4T6 812 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 STPG1Q5TH74 334 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 RAP1GAP2Q684P5 730 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 DPY19L2P1Q6NXN4 242 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 OLFML1Q6UWY5 402 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 SND1Q7KZF4 910 aaKnown RBP eCLIP12.82□□□□□ -0.36
SS18-225ENST00000585121 RABEPKQ7Z6M1 372 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 KIAA0907Q7Z7F0 614 aaPredicted RBP12.82□□□□□ -0.36
SS18-225ENST00000585121 ADIPOR2Q86V24 386 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 ZNF677Q86XU0 584 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 CEP76Q8TAP6 659 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 CYB5D2Q8WUJ1 264 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 FOXJ1Q92949 421 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 C18orf8Q96DM3 657 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 SPAG5Q96R06 1193 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 EDEM2Q9BV94 578 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 SLC6A17Q9H1V8 727 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 FBRSQ9HAH7 460 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 FAM207AQ9NSI2 230 aaPredicted RBP12.82□□□□□ -0.36
SS18-225ENST00000585121 KIAA1522Q9P206 1035 aaPredicted RBP12.82□□□□□ -0.36
SS18-225ENST00000585121 STAP1Q9ULZ2 295 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 PAXBP1Q9Y5B6 917 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 DNAH14Q0VDD8 3507 aa12.82□□□□□ -0.36
SS18-225ENST00000585121 F8VZ95 297 aa12.81□□□□□ -0.36
SS18-225ENST00000585121 PRKCHP24723 683 aa12.81□□□□□ -0.36
SS18-225ENST00000585121 CD6P30203 668 aa12.81□□□□□ -0.36
SS18-225ENST00000585121 CD70P32970 193 aa12.81□□□□□ -0.36
SS18-225ENST00000585121 CDH5P33151 784 aaPredicted RBP12.81□□□□□ -0.36
SS18-225ENST00000585121 PTGER3P43115 390 aa12.81□□□□□ -0.36
SS18-225ENST00000585121 COPB1P53618 953 aaKnown RBP12.81□□□□□ -0.36
SS18-225ENST00000585121 OXCT1P55809 520 aa12.81□□□□□ -0.36
SS18-225ENST00000585121 RNASE9P60153 205 aaKnown RBP12.81□□□□□ -0.36
SS18-225ENST00000585121 LMAN2Q12907 356 aa12.81□□□□□ -0.36
SS18-225ENST00000585121 TTC39BQ5VTQ0 682 aaPredicted RBP12.81□□□□□ -0.36
SS18-225ENST00000585121 DAB2IPQ5VWQ8 1189 aa12.81□□□□□ -0.36
SS18-225ENST00000585121 TCEAL6Q6IPX3 200 aa12.81□□□□□ -0.36
SS18-225ENST00000585121 CFAP52Q8N1V2 620 aa12.81□□□□□ -0.36
SS18-225ENST00000585121 DEFB119Q8N690 84 aa12.81□□□□□ -0.36
SS18-225ENST00000585121 ZNF397Q8NF99 534 aaPredicted RBP12.81□□□□□ -0.36
SS18-225ENST00000585121 NEK11Q8NG66 645 aa12.81□□□□□ -0.36
SS18-225ENST00000585121 OR2T3Q8NH03 318 aa12.81□□□□□ -0.36
SS18-225ENST00000585121 TCEAL3Q969E4 200 aa12.81□□□□□ -0.36
SS18-225ENST00000585121 PRICKLE1Q96MT3 831 aaPredicted RBP12.81□□□□□ -0.36
SS18-225ENST00000585121 PPP1R9BQ96SB3 815 aa12.81□□□□□ -0.36
SS18-225ENST00000585121 MKRN2Q9H000 416 aaKnown RBP12.81□□□□□ -0.36
SS18-225ENST00000585121 ITM2CQ9NQX7 267 aa12.81□□□□□ -0.36
SS18-225ENST00000585121 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.81□□□□□ -0.36
SS18-225ENST00000585121 LIMA1Q9UHB6 759 aaKnown RBP12.81□□□□□ -0.36
SS18-225ENST00000585121 EVLQ9UI08 416 aaPredicted RBP12.81□□□□□ -0.36
SS18-225ENST00000585121 EML5Q05BV3 1969 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 M0QYT0 321 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 GFPT2O94808 682 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms