RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 HSD3B7Q9H2F3 369 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 CEP250Q9BV73 2442 aa21.17■□□□□ 0.98
SS18-224ENST00000584083 FOXD2O60548 495 aaPredicted RBP21.16■□□□□ 0.98
SS18-224ENST00000584083 ATP1A3P13637 1013 aa21.16■□□□□ 0.98
SS18-224ENST00000584083 ABCB4P21439 1286 aa21.16■□□□□ 0.98
SS18-224ENST00000584083 CCR1P32246 355 aa21.16■□□□□ 0.98
SS18-224ENST00000584083 NOS2P35228 1153 aa21.16■□□□□ 0.98
SS18-224ENST00000584083 STAT1P42224 750 aa21.16■□□□□ 0.98
SS18-224ENST00000584083 DHPSP49366 369 aaPredicted RBP21.16■□□□□ 0.98
SS18-224ENST00000584083 JAM2P57087 298 aa21.16■□□□□ 0.98
SS18-224ENST00000584083 FNDC3BQ53EP0 1204 aaKnown RBP21.16■□□□□ 0.98
SS18-224ENST00000584083 NAA35Q5VZE5 725 aa21.16■□□□□ 0.98
SS18-224ENST00000584083 KIAA1324Q6UXG2 1013 aaKnown RBP21.16■□□□□ 0.98
SS18-224ENST00000584083 ZNF677Q86XU0 584 aa21.16■□□□□ 0.98
SS18-224ENST00000584083 DDX51Q8N8A6 666 aaKnown RBP eCLIP21.16■□□□□ 0.98
SS18-224ENST00000584083 C12orf50Q8NA57 414 aaPredicted RBP21.16■□□□□ 0.98
SS18-224ENST00000584083 ZNF397Q8NF99 534 aaPredicted RBP21.16■□□□□ 0.98
SS18-224ENST00000584083 WFDC5Q8TCV5 224 aa21.16■□□□□ 0.98
SS18-224ENST00000584083 CYB5D2Q8WUJ1 264 aa21.16■□□□□ 0.98
SS18-224ENST00000584083 SLC20A1Q8WUM9 679 aa21.16■□□□□ 0.98
SS18-224ENST00000584083 CPA5Q8WXQ8 436 aa21.16■□□□□ 0.98
SS18-224ENST00000584083 MYEOVQ96EZ4 313 aa21.16■□□□□ 0.98
SS18-224ENST00000584083 SLC6A17Q9H1V8 727 aa21.16■□□□□ 0.98
SS18-224ENST00000584083 CD248Q9HCU0 757 aa21.16■□□□□ 0.98
SS18-224ENST00000584083 CDV3Q9UKY7 258 aaKnown RBP21.16■□□□□ 0.98
SS18-224ENST00000584083 PLA2G4CQ9UP65 541 aa21.16■□□□□ 0.98
SS18-224ENST00000584083 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 SMTNL1A8MU46 457 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 KCNU1A8MYU2 1149 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 M0QYT0 321 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 ZNF806P0C7X5 589 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 POLR2EP19388 210 aaKnown RBP21.15■□□□□ 0.98
SS18-224ENST00000584083 TACR2P21452 398 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 SDHBP21912 280 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 PRKCHP24723 683 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 CD70P32970 193 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 MATKP42679 507 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 GABRB2P47870 512 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 EIF4EBP2Q13542 120 aaPredicted RBP21.15■□□□□ 0.98
SS18-224ENST00000584083 CDH18Q13634 790 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 ENPP2Q13822 863 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 SF3A2Q15428 464 aaKnown RBP21.15■□□□□ 0.98
SS18-224ENST00000584083 FUT11Q495W5 492 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 FAM102AQ5T9C2 384 aaPredicted RBP21.15■□□□□ 0.98
SS18-224ENST00000584083 MBLAC2Q68D91 279 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 KIAA0907Q7Z7F0 614 aaPredicted RBP21.15■□□□□ 0.98
SS18-224ENST00000584083 ADIPOR2Q86V24 386 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 TMEFF1Q8IYR6 380 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 FIBINQ8TAL6 211 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 MRGPRX1Q96LB2 322 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 ERGIC2Q96RQ1 377 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 BPIFA3Q9BQP9 254 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.15■□□□□ 0.98
SS18-224ENST00000584083 MBD1Q9UIS9 605 aaPredicted RBP21.15■□□□□ 0.98
SS18-224ENST00000584083 NOCTQ9UK39 431 aaKnown RBP21.15■□□□□ 0.98
SS18-224ENST00000584083 CKAP5Q14008 2032 aa21.15■□□□□ 0.98
SS18-224ENST00000584083 LOC105378220A0A1B0GUY1 285 aaPredicted RBP21.14■□□□□ 0.97
SS18-224ENST00000584083 BCLAF3A2AJT9 711 aaKnown RBP21.14■□□□□ 0.97
SS18-224ENST00000584083 F5H5T6 163 aa21.14■□□□□ 0.97
SS18-224ENST00000584083 GOLGA8SH3BPF8 625 aa21.14■□□□□ 0.97
SS18-224ENST00000584083 ZNF217O75362 1048 aa21.14■□□□□ 0.97
SS18-224ENST00000584083 CAVIN2O95810 425 aa21.14■□□□□ 0.97
SS18-224ENST00000584083 ATP5BP06576 529 aaKnown RBP21.14■□□□□ 0.97
SS18-224ENST00000584083 EPHX1P07099 455 aa21.14■□□□□ 0.97
SS18-224ENST00000584083 NOMO3P69849 1222 aa21.14■□□□□ 0.97
SS18-224ENST00000584083 CDR2Q01850 454 aa21.14■□□□□ 0.97
SS18-224ENST00000584083 PUM1Q14671 1186 aaKnown RBP eCLIP21.14■□□□□ 0.97
SS18-224ENST00000584083 C2CD6Q53TS8 623 aa21.14■□□□□ 0.97
SS18-224ENST00000584083 RNF43Q68DV7 783 aa21.14■□□□□ 0.97
SS18-224ENST00000584083 APTXQ7Z2E3 356 aaKnown RBP21.14■□□□□ 0.97
SS18-224ENST00000584083 CYP2U1Q7Z449 544 aa21.14■□□□□ 0.97
SS18-224ENST00000584083 XYLT1Q86Y38 959 aa21.14■□□□□ 0.97
SS18-224ENST00000584083 SMOC1Q9H4F8 434 aa21.14■□□□□ 0.97
SS18-224ENST00000584083 PRDM16Q9HAZ2 1276 aa21.14■□□□□ 0.97
SS18-224ENST00000584083 VPS45Q9NRW7 570 aa21.14■□□□□ 0.97
SS18-224ENST00000584083 RRN3Q9NYV6 651 aa21.14■□□□□ 0.97
SS18-224ENST00000584083 STAP1Q9ULZ2 295 aa21.14■□□□□ 0.97
SS18-224ENST00000584083 H0Y626 953 aa21.13■□□□□ 0.97
SS18-224ENST00000584083 LUC7L3O95232 432 aaKnown RBP21.13■□□□□ 0.97
SS18-224ENST00000584083 ZNF165P49910 485 aa21.13■□□□□ 0.97
SS18-224ENST00000584083 LMAN2Q12907 356 aa21.13■□□□□ 0.97
SS18-224ENST00000584083 AASDHQ4L235 1098 aaPredicted RBP21.13■□□□□ 0.97
SS18-224ENST00000584083 PLA2G2CQ5R387 149 aa21.13■□□□□ 0.97
SS18-224ENST00000584083 SLC36A4Q6YBV0 504 aa21.13■□□□□ 0.97
SS18-224ENST00000584083 ARMCX6Q7L4S7 300 aa21.13■□□□□ 0.97
SS18-224ENST00000584083 DHX40Q8IX18 779 aaKnown RBP21.13■□□□□ 0.97
SS18-224ENST00000584083 NPY6RQ99463 290 aa21.13■□□□□ 0.97
SS18-224ENST00000584083 CYP8B1Q9UNU6 501 aa21.13■□□□□ 0.97
SS18-224ENST00000584083 GON4LQ3T8J9 2241 aa21.13■□□□□ 0.97
SS18-224ENST00000584083 DLDP09622 509 aaKnown RBP21.12■□□□□ 0.97
SS18-224ENST00000584083 HLA-EP13747 358 aa21.12■□□□□ 0.97
SS18-224ENST00000584083 CHRNB2P17787 502 aa21.12■□□□□ 0.97
SS18-224ENST00000584083 SCNN1AP37088 669 aa21.12■□□□□ 0.97
SS18-224ENST00000584083 SULT1E1P49888 294 aa21.12■□□□□ 0.97
SS18-224ENST00000584083 FMO1Q01740 532 aa21.12■□□□□ 0.97
SS18-224ENST00000584083 RPL6Q02878 288 aaKnown RBP21.12■□□□□ 0.97
SS18-224ENST00000584083 MTA1Q13330 715 aa21.12■□□□□ 0.97
SS18-224ENST00000584083 RABGAP1LQ5R372 815 aa21.12■□□□□ 0.97
SS18-224ENST00000584083 TRIM72Q6ZMU5 477 aa21.12■□□□□ 0.97
SS18-224ENST00000584083 SND1Q7KZF4 910 aaKnown RBP eCLIP21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms