RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 CHSY1Q86X52 802 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 RFX6Q8HWS3 928 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 FAM217AQ8IXS0 508 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 SUSD6Q92537 303 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 SMARCD2Q92925 531 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 E2F7Q96AV8 911 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 TBC1D31Q96DN5 1066 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 ZSWIM3Q96MP5 696 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 PRMT1Q99873 361 aaKnown RBP11.09□□□□□ -0.63
SS18-213ENST00000579640 CATSPERBQ9H7T0 1116 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 UBE2ZQ9H832 354 aaPredicted RBP11.09□□□□□ -0.63
SS18-213ENST00000579640 TRPV4Q9HBA0 871 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 DONSONQ9NYP3 566 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 TBC1D14Q9P2M4 693 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 XPO7Q9UIA9 1087 aaKnown RBP11.09□□□□□ -0.63
SS18-213ENST00000579640 DENND4AQ7Z401 1863 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 IGLV3-10A0A075B6K4 115 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 GOLGA6L10A0A0M3HER8 536 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 E9PAM4 449 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 FAM72CH0Y354 149 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 APOL1O14791 398 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 PRAMEF12O95522 483 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 CHKAP35790 457 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 MMRN1Q13201 1228 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 KLF1Q13351 362 aaPredicted RBP11.09□□□□□ -0.63
SS18-213ENST00000579640 DPYSQ14117 519 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 ZNF77Q15935 545 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 C5orf22Q49AR2 442 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 FAM133BQ5BKY9 247 aaKnown RBP11.09□□□□□ -0.63
SS18-213ENST00000579640 FAM72AQ5TYM5 149 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 RAP1GAP2Q684P5 730 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 SLC9A4Q6AI14 798 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 NADSYN1Q6IA69 706 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 FAM72DQ6L9T8 149 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 BBS12Q6ZW61 710 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 FAM72BQ86X60 149 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 ZNF683Q8IZ20 524 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 CPXM2Q8N436 756 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 CEP112Q8N8E3 955 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 TTC13Q8NBP0 860 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 MNS1Q8NEH6 495 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 PCDH19Q8TAB3 1148 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 OTUB2Q96DC9 234 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 MS4A14Q96JA4 679 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 ASB16Q96NS5 453 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 MAGEB5Q9BZ81 275 aa11.09□□□□□ -0.63
SS18-213ENST00000579640 SMG9Q9H0W8 520 aaKnown RBP11.09□□□□□ -0.63
SS18-213ENST00000579640 DRGXA6NNA5 263 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 SLC9A3R1O14745 358 aaPredicted RBP11.08□□□□□ -0.64
SS18-213ENST00000579640 CST8O60676 142 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 KRT10P13645 584 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 TGM2P21980 687 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 EPHB2P29323 1055 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 SMAD4Q13485 552 aaKnown RBP11.08□□□□□ -0.64
SS18-213ENST00000579640 SKIV2LQ15477 1246 aaKnown RBP11.08□□□□□ -0.64
SS18-213ENST00000579640 FAM78AQ5JUQ0 283 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 RABGAP1LQ5R372 815 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 TTC39BQ5VTQ0 682 aaPredicted RBP11.08□□□□□ -0.64
SS18-213ENST00000579640 KAZNQ674X7 775 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 FBXL22Q6P050 247 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 ZNF572Q7Z3I7 529 aaPredicted RBP11.08□□□□□ -0.64
SS18-213ENST00000579640 ANKS1BQ7Z6G8 1248 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 WBP2Q969T9 261 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 RPGRIP1Q96KN7 1286 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 HEMGNQ9BXL5 484 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 FRMD8P1Q9BZ68 369 aaPredicted RBP11.08□□□□□ -0.64
SS18-213ENST00000579640 ZYG11BQ9C0D3 744 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 POMKQ9H5K3 350 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 ARHGEF4Q9NR80 690 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 HOMER3Q9NSC5 361 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 CDH22Q9UJ99 828 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 VANGL2Q9ULK5 521 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 CCL26Q9Y258 94 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 USP15Q9Y4E8 981 aaPredicted RBP11.08□□□□□ -0.64
SS18-213ENST00000579640 SNX10Q9Y5X0 201 aa11.08□□□□□ -0.64
SS18-213ENST00000579640 TYW5A2RUC4 315 aaKnown RBP11.07□□□□□ -0.64
SS18-213ENST00000579640 WASH4PA8MWX3 477 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 CCDC188H7C350 402 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 APOC4-APOC2K7ER74 178 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 APOC2P02655 101 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 RHOQP17081 205 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 ERCC2P18074 760 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 AMPD1P23109 780 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 GBP2P32456 591 aaPredicted RBP11.07□□□□□ -0.64
SS18-213ENST00000579640 SERPINB6P35237 376 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 GGCXP38435 758 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 CCDC85BQ15834 202 aaPredicted RBP11.07□□□□□ -0.64
SS18-213ENST00000579640 RWDD4Q6NW29 188 aaKnown RBP11.07□□□□□ -0.64
SS18-213ENST00000579640 POTEHQ6S545 545 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 BZW1Q7L1Q6 419 aaKnown RBP11.07□□□□□ -0.64
SS18-213ENST00000579640 OTOP3Q7RTS5 596 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 C14orf80Q86SX3 495 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 LGI2Q8N0V4 545 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 LZTR1Q8N653 840 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 PQLC3Q8N755 202 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 RPRD1AQ96P16 312 aaPredicted RBP11.07□□□□□ -0.64
SS18-213ENST00000579640 NEU3Q9UQ49 428 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 GOLGA6L7A0A1B0GV03 622 aa11.07□□□□□ -0.64
SS18-213ENST00000579640 H3BQ06 376 aaPredicted RBP11.07□□□□□ -0.64
SS18-213ENST00000579640 PDE2AO00408 941 aaPredicted RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms