RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 DOCK8Q8NF50 2099 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 TCRBV7S2A1N4TA0A589 114 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 E2F8A0AVK6 867 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 DRGXA6NNA5 263 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 DCLK1O15075 740 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 PRAMEF12O95522 483 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 IRF1P10914 325 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 KRT10P13645 584 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 TPI1P60174 286 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 ADCY2Q08462 1091 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 AUHQ13825 339 aaKnown RBP16.67■□□□□ 0.26
SS18-211ENST00000578954 ZNF77Q15935 545 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 C14orf80Q86SX3 495 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 DENND1CQ8IV53 801 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 CEP112Q8N8E3 955 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 SH3RF2Q8TEC5 729 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 SUSD6Q92537 303 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 FGF13Q92913 245 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 TBC1D31Q96DN5 1066 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 NECTIN4Q96NY8 510 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 SLITRK6Q9H5Y7 841 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 TRPV4Q9HBA0 871 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 CFAP97Q9P2B7 532 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 CCL26Q9Y258 94 aa16.67■□□□□ 0.26
SS18-211ENST00000578954 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.66■□□□□ 0.26
SS18-211ENST00000578954 WASH4PA8MWX3 477 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 E9PAM4 449 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 FGF10O15520 208 aaPredicted RBP16.66■□□□□ 0.26
SS18-211ENST00000578954 CREB3O43889 395 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 CST8O60676 142 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 ZFXP17010 805 aaPredicted RBP16.66■□□□□ 0.26
SS18-211ENST00000578954 TACR2P21452 398 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 GGCXP38435 758 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 CYP1B1Q16678 543 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 ADGRF1Q5T601 910 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 RAP1GAP2Q684P5 730 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 FBXL22Q6P050 247 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 Q7L0L9 218 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 CHSY1Q86X52 802 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 RFX6Q8HWS3 928 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 ARID3BQ8IVW6 561 aaPredicted RBP16.66■□□□□ 0.26
SS18-211ENST00000578954 MICALL1Q8N3F8 863 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 CPXM2Q8N436 756 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 PLD5Q8N7P1 536 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 RIN3Q8TB24 985 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 ZSCAN18Q8TBC5 510 aaPredicted RBP16.66■□□□□ 0.26
SS18-211ENST00000578954 RPGRIP1Q96KN7 1286 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 ASB16Q96NS5 453 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 DDX50Q9BQ39 737 aaKnown RBP16.66■□□□□ 0.26
SS18-211ENST00000578954 HEMGNQ9BXL5 484 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 SIK2Q9H0K1 926 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 SMG9Q9H0W8 520 aaKnown RBP16.66■□□□□ 0.26
SS18-211ENST00000578954 RETREG1Q9H6L5 497 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 OBP2AQ9NY56 170 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 CD207Q9UJ71 328 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 CDH7Q9ULB5 785 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 SH3BP1Q9Y3L3 701 aa16.66■□□□□ 0.26
SS18-211ENST00000578954 APOC4-APOC2K7ER74 178 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 APOL1O14791 398 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 APOC2P02655 101 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 ERCC2P18074 760 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 TGM2P21980 687 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 AMPD1P23109 780 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 EPHB2P29323 1055 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 SLC6A4P31645 630 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 CBX2Q14781 532 aaPredicted RBP16.65■□□□□ 0.26
SS18-211ENST00000578954 PAFAH1B3Q15102 231 aaKnown RBP16.65■□□□□ 0.26
SS18-211ENST00000578954 LLGL1Q15334 1064 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 KAZNQ674X7 775 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 NCBP2-AS2Q69YL0 99 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 LRRC31Q6UY01 552 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 GET4Q7L5D6 327 aaPredicted RBP16.65■□□□□ 0.26
SS18-211ENST00000578954 CELF5Q8N6W0 485 aaKnown RBP16.65■□□□□ 0.26
SS18-211ENST00000578954 PRELID2Q8N945 189 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 C12orf50Q8NA57 414 aaPredicted RBP16.65■□□□□ 0.26
SS18-211ENST00000578954 TTC13Q8NBP0 860 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 MNS1Q8NEH6 495 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 SPATA4Q8NEY3 305 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 SMARCD2Q92925 531 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 MAK16Q9BXY0 300 aaKnown RBP16.65■□□□□ 0.26
SS18-211ENST00000578954 FRMD8P1Q9BZ68 369 aaPredicted RBP16.65■□□□□ 0.26
SS18-211ENST00000578954 VANGL2Q9ULK5 521 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 NR2E1Q9Y466 385 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 ZFP37Q9Y6Q3 630 aaPredicted RBP16.65■□□□□ 0.26
SS18-211ENST00000578954 DOCK4Q8N1I0 1966 aa16.65■□□□□ 0.26
SS18-211ENST00000578954 GOLGA6L7A0A1B0GV03 622 aa16.64■□□□□ 0.25
SS18-211ENST00000578954 F5H5T6 163 aa16.64■□□□□ 0.25
SS18-211ENST00000578954 CCDC188H7C350 402 aa16.64■□□□□ 0.25
SS18-211ENST00000578954 RHOQP17081 205 aa16.64■□□□□ 0.25
SS18-211ENST00000578954 FAM78AQ5JUQ0 283 aa16.64■□□□□ 0.25
SS18-211ENST00000578954 RNF43Q68DV7 783 aa16.64■□□□□ 0.25
SS18-211ENST00000578954 DRICH1Q6PGQ1 229 aaPredicted RBP16.64■□□□□ 0.25
SS18-211ENST00000578954 NLRP14Q86W24 1093 aa16.64■□□□□ 0.25
SS18-211ENST00000578954 RTL3Q8N8U3 475 aaKnown RBP16.64■□□□□ 0.25
SS18-211ENST00000578954 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.64■□□□□ 0.25
SS18-211ENST00000578954 IGSF8Q969P0 613 aa16.64■□□□□ 0.25
SS18-211ENST00000578954 MYEOVQ96EZ4 313 aa16.64■□□□□ 0.25
SS18-211ENST00000578954 PRICKLE1Q96MT3 831 aaPredicted RBP16.64■□□□□ 0.25
SS18-211ENST00000578954 CARD6Q9BX69 1037 aa16.64■□□□□ 0.25
SS18-211ENST00000578954 ZYG11BQ9C0D3 744 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms