RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SH3BP1Q9Y3L3 701 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 ALG6Q9Y672 507 aa9.62□□□□□ -0.87
VPS35-211ENST00000569950 ZNF318Q5VUA4 2279 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 MACROD2A1Z1Q3 448 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 KRBA1A5PL33 1030 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 TMEM110-MUSTN1A8MSY1 372 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 HOXC11O43248 304 aaPredicted RBP9.61□□□□□ -0.87
VPS35-211ENST00000569950 CNTN5O94779 1100 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 CD48P09326 243 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 CISD3P0C7P0 127 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 SLC2A3P11169 496 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 L1CAMP32004 1257 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 HARS2P49590 506 aaKnown RBP9.61□□□□□ -0.87
VPS35-211ENST00000569950 PEX5P50542 639 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 RUNX3Q13761 415 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 PDGFRLQ15198 375 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 DPYSL2Q16555 572 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 TAZQ16635 292 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 ALFQ53S48 1182 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 KCNT1Q5JUK3 1230 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 KIAA1328Q86T90 577 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 NT5DC3Q86UY8 548 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 NLRP14Q86W24 1093 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 UNC45BQ8IWX7 931 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 C17orf53Q8N3J3 647 aaPredicted RBP9.61□□□□□ -0.87
VPS35-211ENST00000569950 ALG3Q92685 438 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 ANP32BQ92688 251 aaKnown RBP9.61□□□□□ -0.87
VPS35-211ENST00000569950 KRT35Q92764 455 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 DNASE1L2Q92874 299 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 HERPUD2Q9BSE4 406 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 KLC2Q9H0B6 622 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 NOL6Q9H6R4 1146 aaKnown RBP9.61□□□□□ -0.87
VPS35-211ENST00000569950 TBC1D14Q9P2M4 693 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 PCSK1NQ9UHG2 260 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 SORCS3Q9UPU3 1222 aa9.61□□□□□ -0.87
VPS35-211ENST00000569950 CKAP5Q14008 2032 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 CACNG3O60359 315 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 TSPAN3O60637 253 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 LRIG2O94898 1065 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 APOEP02649 317 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 PTMAP06454 111 aaKnown RBP9.6□□□□□ -0.87
VPS35-211ENST00000569950 GJA4P35212 333 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 SLC6A11P48066 632 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 IFNAR2P48551 515 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 KIF5AQ12840 1032 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 FZD5Q13467 585 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 DPYSQ14117 519 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 SMTNL2Q2TAL5 461 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 FSCBQ5H9T9 825 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 ERMARDQ5T6L9 678 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 DCAF12L1Q5VU92 463 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 CXorf57Q6NSI4 855 aaKnown RBP9.6□□□□□ -0.87
VPS35-211ENST00000569950 SCYL2Q6P3W7 929 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 POLNQ7Z5Q5 900 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 KIAA0907Q7Z7F0 614 aaPredicted RBP9.6□□□□□ -0.87
VPS35-211ENST00000569950 CIR1Q86X95 450 aaPredicted RBP9.6□□□□□ -0.87
VPS35-211ENST00000569950 LGI2Q8N0V4 545 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 CCAR2Q8N163 923 aaKnown RBP9.6□□□□□ -0.87
VPS35-211ENST00000569950 CFAP52Q8N1V2 620 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 RNF10Q8N5U6 811 aaKnown RBP9.6□□□□□ -0.87
VPS35-211ENST00000569950 ATP6V0D2Q8N8Y2 350 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 TTC16Q8NEE8 873 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 TTC8Q8TAM2 541 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 KIAA1524Q8TCG1 905 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 TEKT4Q8WW24 435 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 RAPGEF5Q92565 580 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 FAF2Q96CS3 445 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 ALG14Q96F25 216 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 UHRF1Q96T88 793 aaPredicted RBP9.6□□□□□ -0.87
VPS35-211ENST00000569950 SIK2Q9H0K1 926 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 BRD9Q9H8M2 597 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 PCDH18Q9HCL0 1135 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 LUC7LQ9NQ29 371 aaKnown RBP9.6□□□□□ -0.87
VPS35-211ENST00000569950 LZTFL1Q9NQ48 299 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 HEBP1Q9NRV9 189 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 NDFIP2Q9NV92 336 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 PLK2Q9NYY3 685 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 OR12D3Q9UGF7 316 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 LSM7Q9UK45 103 aaKnown RBP9.6□□□□□ -0.87
VPS35-211ENST00000569950 VANGL2Q9ULK5 521 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 AP4E1Q9UPM8 1137 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 ZNF510Q9Y2H8 683 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 MFHAS1Q9Y4C4 1052 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 SHROOM3Q8TF72 1996 aa9.6□□□□□ -0.87
VPS35-211ENST00000569950 KMT2EQ8IZD2 1858 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 WDFY4Q6ZS81 3184 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 E9PAM4 449 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 SLC9A3R1O14745 358 aaPredicted RBP9.59□□□□□ -0.87
VPS35-211ENST00000569950 DDX3YO15523 660 aaKnown RBP9.59□□□□□ -0.87
VPS35-211ENST00000569950 PALMO75781 387 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 IPO7O95373 1038 aaKnown RBP9.59□□□□□ -0.87
VPS35-211ENST00000569950 TYRP14679 529 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 CTHP32929 405 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 CTNNA1P35221 906 aaKnown RBP9.59□□□□□ -0.87
VPS35-211ENST00000569950 NOP2P46087 812 aaKnown RBP9.59□□□□□ -0.87
VPS35-211ENST00000569950 SLC11A2P49281 568 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 AIF1P55008 147 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 ZXDAP98168 799 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 ADCY2Q08462 1091 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 MMRN1Q13201 1228 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms