RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 DESP17661 470 aa17.9■□□□□ 0.46
CLN3-217ENST00000565354 HNRNPH3P31942 346 aaKnown RBP17.9■□□□□ 0.46
CLN3-217ENST00000565354 GJA4P35212 333 aa17.9■□□□□ 0.46
CLN3-217ENST00000565354 EIF4A3P38919 411 aaKnown RBP17.9■□□□□ 0.46
CLN3-217ENST00000565354 GSCP56915 257 aaPredicted RBP17.9■□□□□ 0.46
CLN3-217ENST00000565354 PTP4A2Q12974 167 aa17.9■□□□□ 0.46
CLN3-217ENST00000565354 TBX2Q13207 712 aaPredicted RBP17.9■□□□□ 0.46
CLN3-217ENST00000565354 COL9A2Q14055 689 aaPredicted RBP17.9■□□□□ 0.46
CLN3-217ENST00000565354 TMEM196Q5HYL7 178 aa17.9■□□□□ 0.46
CLN3-217ENST00000565354 LY6G5CQ5SRR4 150 aa17.9■□□□□ 0.46
CLN3-217ENST00000565354 UNQ6494/PRO21346Q6UXR6 183 aa17.9■□□□□ 0.46
CLN3-217ENST00000565354 ATP6V0D2Q8N8Y2 350 aa17.9■□□□□ 0.46
CLN3-217ENST00000565354 C3orf20Q8ND61 904 aa17.9■□□□□ 0.46
CLN3-217ENST00000565354 ZNF653Q96CK0 615 aa17.9■□□□□ 0.46
CLN3-217ENST00000565354 VCPIP1Q96JH7 1222 aa17.9■□□□□ 0.46
CLN3-217ENST00000565354 SPHK2Q9NRA0 654 aa17.9■□□□□ 0.46
CLN3-217ENST00000565354 ARHGAP20Q9P2F6 1191 aa17.9■□□□□ 0.46
CLN3-217ENST00000565354 AKAP13Q12802 2813 aa17.9■□□□□ 0.46
CLN3-217ENST00000565354 OTOL1A6NHN0 477 aaPredicted RBP17.89■□□□□ 0.45
CLN3-217ENST00000565354 C1QTNF9BB2RNN3 333 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 AKR1B10O60218 316 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 GREM1O60565 184 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 ADCY5O95622 1261 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 LATS1O95835 1130 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 KLKB1P03952 638 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 C1QTNF9P0C862 333 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 SLC2A3P11169 496 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 PDGFRAP16234 1089 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 ABCB4P21439 1286 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 RRM1P23921 792 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 SDC4P31431 198 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 CCR1P32246 355 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 FLT3P36888 993 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 PITX1P78337 314 aaPredicted RBP17.89■□□□□ 0.45
CLN3-217ENST00000565354 DEUP1Q05D60 604 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 GRSF1Q12849 480 aaKnown RBP eCLIP17.89■□□□□ 0.45
CLN3-217ENST00000565354 PLK5Q496M5 336 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 CCDC122Q5T0U0 273 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 TCEAL6Q6IPX3 200 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 FSTL4Q6MZW2 842 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 DCUN1D2Q6PH85 259 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 CAMKK1Q8N5S9 505 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 EMC1Q8N766 993 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 TCEAL3Q969E4 200 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 FCRL2Q96LA5 508 aaPredicted RBP17.89■□□□□ 0.45
CLN3-217ENST00000565354 DDX50Q9BQ39 737 aaKnown RBP17.89■□□□□ 0.45
CLN3-217ENST00000565354 BBS2Q9BXC9 721 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.89■□□□□ 0.45
CLN3-217ENST00000565354 TMEM59LQ9UK28 342 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 ZMIZ1Q9ULJ6 1067 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 PAXBP1Q9Y5B6 917 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 ABCA7Q8IZY2 2146 aa17.89■□□□□ 0.45
CLN3-217ENST00000565354 SSU72P8A0A1W2PR75 194 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 NEDD8-MDP1E9PL57 170 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 ACSL4O60488 711 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 GJB6O95452 261 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 F9P00740 461 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 IGLV3-25P01717 112 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 IGLV3-27P01718 113 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 MYBL1P10243 752 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 NOVA1P51513 510 aaKnown RBP17.88■□□□□ 0.45
CLN3-217ENST00000565354 ARID5BQ14865 1188 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 SLC25A52Q3SY17 297 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 ZC3H12AQ5D1E8 599 aaKnown RBP17.88■□□□□ 0.45
CLN3-217ENST00000565354 ALKBH5Q6P6C2 394 aaKnown RBP17.88■□□□□ 0.45
CLN3-217ENST00000565354 RHBDF2Q6PJF5 856 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 WDR59Q6PJI9 974 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 ARCQ7LC44 396 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 DNAAF5Q86Y56 855 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 TMEM25Q86YD3 366 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 JOSD2Q8TAC2 188 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 OLIG1Q8TAK6 271 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 RXFP2Q8WXD0 754 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 CD101Q93033 1021 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 BHMTQ93088 406 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 CCDC42Q96M95 316 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 CFAP57Q96MR6 1250 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 MCEEQ96PE7 176 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 XPO6Q96QU8 1125 aaKnown RBP17.88■□□□□ 0.45
CLN3-217ENST00000565354 TBCBQ99426 244 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 NPY6RQ99463 290 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 EDEM2Q9BV94 578 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 DUSP15Q9H1R2 295 aaPredicted RBP17.88■□□□□ 0.45
CLN3-217ENST00000565354 PARVAQ9NVD7 372 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 TMEM51Q9NW97 253 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 MYO1AQ9UBC5 1043 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 CNOT8Q9UFF9 292 aaKnown RBP17.88■□□□□ 0.45
CLN3-217ENST00000565354 WDFY3Q8IZQ1 3526 aa17.88■□□□□ 0.45
CLN3-217ENST00000565354 A0A087X0T9 212 aa17.87■□□□□ 0.45
CLN3-217ENST00000565354 TYW5A2RUC4 315 aaKnown RBP17.87■□□□□ 0.45
CLN3-217ENST00000565354 SIGLEC16A6NMB1 481 aa17.87■□□□□ 0.45
CLN3-217ENST00000565354 TRDMT1O14717 391 aaKnown RBP17.87■□□□□ 0.45
CLN3-217ENST00000565354 ATMINO43313 823 aaPredicted RBP17.87■□□□□ 0.45
CLN3-217ENST00000565354 FAM228BP0C875 321 aa17.87■□□□□ 0.45
CLN3-217ENST00000565354 GPD1P21695 349 aa17.87■□□□□ 0.45
CLN3-217ENST00000565354 ATP11AP98196 1134 aa17.87■□□□□ 0.45
CLN3-217ENST00000565354 MTA1Q13330 715 aa17.87■□□□□ 0.45
CLN3-217ENST00000565354 MAPK8IP2Q13387 824 aaPredicted RBP17.87■□□□□ 0.45
CLN3-217ENST00000565354 CDO1Q16878 200 aa17.87■□□□□ 0.45
CLN3-217ENST00000565354 CPXM2Q8N436 756 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms