RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 KIAA1958Q8N8K9 716 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 TTC16Q8NEE8 873 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 SPATA4Q8NEY3 305 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 ZSCAN18Q8TBC5 510 aaPredicted RBP13.23□□□□□ -0.29
CLK3-214ENST00000564096 SH3RF2Q8TEC5 729 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 P3H4Q92791 437 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 CYP2S1Q96SQ9 504 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 ZYG11BQ9C0D3 744 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 RETREG1Q9H6L5 497 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 TMPRSS4Q9NRS4 437 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 TDP1Q9NUW8 608 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 SMARCAL1Q9NZC9 954 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 CWC15Q9P013 229 aaKnown RBP13.23□□□□□ -0.29
CLK3-214ENST00000564096 CLEC1BQ9P126 229 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 XPO7Q9UIA9 1087 aaKnown RBP13.23□□□□□ -0.29
CLK3-214ENST00000564096 STOML2Q9UJZ1 356 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 AGO1Q9UL18 857 aaKnown RBP13.23□□□□□ -0.29
CLK3-214ENST00000564096 VANGL2Q9ULK5 521 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 RAD54BQ9Y620 910 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 OBSL1O75147 1896 aa13.23□□□□□ -0.29
CLK3-214ENST00000564096 I6L893 689 aaPredicted RBP13.22□□□□□ -0.29
CLK3-214ENST00000564096 PDE2AO00408 941 aaPredicted RBP13.22□□□□□ -0.29
CLK3-214ENST00000564096 SLC9A3R1O14745 358 aaPredicted RBP13.22□□□□□ -0.29
CLK3-214ENST00000564096 FOSL2P15408 326 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 CHRNA3P32297 505 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 CHKAP35790 457 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 GGCXP38435 758 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 NR2C2P49116 596 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 FNTAP49354 379 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 LLGL1Q15334 1064 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 ADGRF1Q5T601 910 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 Q6ZNB5 142 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 ADAT2Q7Z6V5 191 aaKnown RBP13.22□□□□□ -0.29
CLK3-214ENST00000564096 LZTR1Q8N653 840 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 CELF5Q8N6W0 485 aaKnown RBP13.22□□□□□ -0.29
CLK3-214ENST00000564096 C12orf50Q8NA57 414 aaPredicted RBP13.22□□□□□ -0.29
CLK3-214ENST00000564096 HJURPQ8NCD3 748 aaPredicted RBP13.22□□□□□ -0.29
CLK3-214ENST00000564096 PCDH19Q8TAB3 1148 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 ITFG1Q8TB96 612 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 GRK7Q8WTQ7 553 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 USP13Q92995 863 aaPredicted RBP13.22□□□□□ -0.29
CLK3-214ENST00000564096 E2F7Q96AV8 911 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 HAUS1Q96CS2 278 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 FERMT1Q9BQL6 677 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 AP1M1Q9BXS5 423 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 GKN1Q9NS71 199 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 TBC1D14Q9P2M4 693 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 CD207Q9UJ71 328 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 CDH7Q9ULB5 785 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 ZFP37Q9Y6Q3 630 aaPredicted RBP13.22□□□□□ -0.29
CLK3-214ENST00000564096 LAMA3Q16787 3333 aa13.22□□□□□ -0.29
CLK3-214ENST00000564096 IGLV3-10A0A075B6K4 115 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 FAM72CH0Y354 149 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 RIOK3O14730 519 aaKnown RBP13.21□□□□□ -0.29
CLK3-214ENST00000564096 PPP1R12AO14974 1030 aaPredicted RBP13.21□□□□□ -0.29
CLK3-214ENST00000564096 PRAMEF12O95522 483 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 CYBBP04839 570 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 RHOQP17081 205 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 ERCC2P18074 760 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 MX2P20592 715 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 IL4RP24394 825 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 MAPKAPK2P49137 400 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 LMNB2Q03252 620 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 C2orf54Q08AI8 447 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 SKIV2LQ15477 1246 aaKnown RBP13.21□□□□□ -0.29
CLK3-214ENST00000564096 ZNF77Q15935 545 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 CYP1B1Q16678 543 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 FAM133BQ5BKY9 247 aaKnown RBP13.21□□□□□ -0.29
CLK3-214ENST00000564096 FAM72AQ5TYM5 149 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 NCBP2-AS2Q69YL0 99 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 NADSYN1Q6IA69 706 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 FAM72DQ6L9T8 149 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 C8orf74Q6P047 294 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 FBXL22Q6P050 247 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 HTR3DQ70Z44 454 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 ANKS1BQ7Z6G8 1248 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 FAM72BQ86X60 149 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 CDKL3Q8IVW4 592 aaPredicted RBP13.21□□□□□ -0.29
CLK3-214ENST00000564096 ARID3BQ8IVW6 561 aaPredicted RBP13.21□□□□□ -0.29
CLK3-214ENST00000564096 CCDC117Q8IWD4 279 aaPredicted RBP13.21□□□□□ -0.29
CLK3-214ENST00000564096 LGI2Q8N0V4 545 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 CPXM2Q8N436 756 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 PQLC3Q8N755 202 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 PLD5Q8N7P1 536 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 RTL3Q8N8U3 475 aaKnown RBP13.21□□□□□ -0.29
CLK3-214ENST00000564096 SMRP1Q8NCR6 262 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 FGF13Q92913 245 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 SMARCD2Q92925 531 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 MAGOHBQ96A72 148 aaKnown RBP13.21□□□□□ -0.29
CLK3-214ENST00000564096 OTUB2Q96DC9 234 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 PRMT1Q99873 361 aaKnown RBP13.21□□□□□ -0.29
CLK3-214ENST00000564096 SMG9Q9H0W8 520 aaKnown RBP13.21□□□□□ -0.29
CLK3-214ENST00000564096 RBM12Q9NTZ6 932 aaKnown RBP13.21□□□□□ -0.29
CLK3-214ENST00000564096 OBP2AQ9NY56 170 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 SNX10Q9Y5X0 201 aa13.21□□□□□ -0.29
CLK3-214ENST00000564096 LAMA2P24043 3122 aaKnown RBP13.21□□□□□ -0.3
CLK3-214ENST00000564096 TRIOBPQ9H2D6 2365 aa13.2□□□□□ -0.3
CLK3-214ENST00000564096 A0A1B0GVM2 712 aa13.2□□□□□ -0.3
CLK3-214ENST00000564096 TCAF2A6NFQ2 919 aa13.2□□□□□ -0.3
CLK3-214ENST00000564096 EFCAB8A8MWE9 144 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms