RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 OLR1P78380 273 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 IL1RL1Q01638 556 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 CREMQ03060 361 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 ACY1Q03154 408 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 RESTQ13127 1097 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 MTX1Q13505 466 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 PPA1Q15181 289 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 LETM2Q2VYF4 491 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 CEP55Q53EZ4 464 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 KRTCAP3Q53RY4 240 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 ODF2Q5BJF6 829 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 NDUFAF5Q5TEU4 345 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 ABHD17BQ5VST6 288 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 SYT10Q6XYQ8 523 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 ENOSF1Q7L5Y1 443 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 MRPL10Q7Z7H8 261 aaKnown RBP5.38□□□□□ -1.55
VPS35-205ENST00000563984 ZBTB46Q86UZ6 589 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 LUZP1Q86V48 1076 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 ZGPATQ8N5A5 531 aaKnown RBP5.38□□□□□ -1.55
VPS35-205ENST00000563984 SYT2Q8N9I0 419 aaPredicted RBP5.38□□□□□ -1.55
VPS35-205ENST00000563984 IQUBQ8NA54 791 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 NLGN4YQ8NFZ3 816 aaPredicted RBP5.38□□□□□ -1.55
VPS35-205ENST00000563984 RFWD2Q8NHY2 731 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 GDAP1Q8TB36 358 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 SSH3Q8TE77 659 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 DIS3LQ8TF46 1054 aaKnown RBP5.38□□□□□ -1.55
VPS35-205ENST00000563984 CASP10Q92851 521 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 CUL5Q93034 780 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 HDAC10Q969S8 669 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 INTS12Q96CB8 462 aaKnown RBP5.38□□□□□ -1.55
VPS35-205ENST00000563984 BOD1Q96IK1 185 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 FAM167AQ96KS9 214 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 COQ10AQ96MF6 247 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 FNBP1Q96RU3 617 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 MYOCQ99972 504 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 RIOK1Q9BRS2 568 aaKnown RBP5.38□□□□□ -1.55
VPS35-205ENST00000563984 CCDC106Q9BWC9 280 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 INTS2Q9H0H0 1204 aaKnown RBP5.38□□□□□ -1.55
VPS35-205ENST00000563984 TDP1Q9NUW8 608 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 ANKFY1Q9P2R3 1169 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 MBD2Q9UBB5 411 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 MALT1Q9UDY8 824 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 L1RE1Q9UN81 338 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 ZNF148Q9UQR1 794 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 TMEM5Q9Y2B1 443 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 MAP3K2Q9Y2U5 619 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 MED16Q9Y2X0 877 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 SPEF1Q9Y4P9 236 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 PCDHGA9Q9Y5G4 932 aaKnown RBP5.38□□□□□ -1.55
VPS35-205ENST00000563984 PCDHGA8Q9Y5G5 932 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 PCDHGA7Q9Y5G6 932 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 PCDHGA6Q9Y5G7 932 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 PCDHGA3Q9Y5H0 932 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 NOX1Q9Y5S8 564 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 TRAV6A0A075B6T7 132 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 GOLGA6L7A0A1B0GV03 622 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 ARHGAP10A1A4S6 786 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 CCDC162PA2VCL2 907 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.37□□□□□ -1.55
VPS35-205ENST00000563984 APOL1O14791 398 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 MAPK13O15264 365 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 POLR2DO15514 142 aaKnown RBP5.37□□□□□ -1.55
VPS35-205ENST00000563984 ASAP2O43150 1006 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 SPOPO43791 374 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 FRAT2O75474 233 aaPredicted RBP5.37□□□□□ -1.55
VPS35-205ENST00000563984 RFPL1O75677 317 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 URI1O94763 535 aaPredicted RBP5.37□□□□□ -1.55
VPS35-205ENST00000563984 HSPA4LO95757 839 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 ECDO95905 644 aaPredicted RBP5.37□□□□□ -1.55
VPS35-205ENST00000563984 OPN1MWP04001 364 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 FESP07332 822 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 ELANEP08246 267 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 OPN1MW2P0DN77 364 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 OPN1MW3P0DN78 364 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 TFEBP19484 476 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 BMP5P22003 454 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 PROZP22891 400 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 CLNS1AP54105 237 aaKnown RBP5.37□□□□□ -1.55
VPS35-205ENST00000563984 SLC8A3P57103 927 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 HAND2P61296 217 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 RPP38P78345 283 aaKnown RBP5.37□□□□□ -1.55
VPS35-205ENST00000563984 CDC42EP1Q00587 391 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 COL10A1Q03692 680 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 SNX1Q13596 522 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 SCARB2Q14108 478 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 TRIM14Q14142 442 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 FRG1Q14331 258 aaKnown RBP5.37□□□□□ -1.55
VPS35-205ENST00000563984 ABCB5Q2M3G0 1257 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 FBXO43Q4G163 708 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 SLC45A4Q5BKX6 768 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 TPGS2Q68CL5 300 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 CXorf57Q6NSI4 855 aaKnown RBP5.37□□□□□ -1.55
VPS35-205ENST00000563984 XRRA1Q6P2D8 792 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 ALKBH5Q6P6C2 394 aaKnown RBP5.37□□□□□ -1.55
VPS35-205ENST00000563984 Q6YL49 198 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 UBE3BQ7Z3V4 1068 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 SYTL1Q8IYJ3 562 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 FAM186BQ8IYM0 893 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 FITM2Q8N6M3 262 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 IL17RDQ8NFM7 739 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms