RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 DPP9Q86TI2 863 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 KBTBD6Q86V97 674 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 IFNL1Q8IU54 200 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 PQLC1Q8N2U9 271 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 BORCS5Q969J3 196 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 EBF4Q9BQW3 602 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 VPS51Q9UID3 782 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 ZSWIM8A7E2V4 1837 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 KAT6AQ92794 2004 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 GOLGA8SH3BPF8 625 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 GOLGA8MH3BSY2 632 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 ETS1P14921 441 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 SSTR1P30872 391 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 MAPK4P31152 587 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 RAB15P59190 212 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 CTBSQ01459 385 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 GCNT1Q02742 428 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 ENPEPQ07075 957 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 MTM1Q13496 603 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 PEX6Q13608 980 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 CYP2A13Q16696 494 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 ZACNQ401N2 412 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 EFHC2Q5JST6 749 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 SPOPLQ6IQ16 392 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 ZNF280DQ6N043 979 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 XKR5Q6UX68 686 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 DENND5BQ6ZUT9 1274 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 PLEKHH3Q7Z736 793 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 CHSY1Q86X52 802 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 USP33Q8TEY7 942 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 PAFAH2Q99487 392 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 RABGEF1Q9UJ41 708 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 STRIP2Q9ULQ0 834 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 CCDC195A0A1B0GUA6 201 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 FAM47E-STBD1D6RA91 191 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 MAFO75444 373 aaPredicted RBP13.66□□□□□ -0.22
CLK3-206ENST00000562078 MTA2O94776 668 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 RALAP11233 206 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 GZMAP12544 262 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 TCEA1P23193 301 aaKnown RBP13.66□□□□□ -0.22
CLK3-206ENST00000562078 CLDN10P78369 228 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 EGFLAMQ63HQ2 1017 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 SLFN12LQ6IEE8 588 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 PGM2L1Q6PCE3 622 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 ARMCX2Q7L311 632 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 WDR75Q8IWA0 830 aaKnown RBP13.66□□□□□ -0.22
CLK3-206ENST00000562078 ABRAQ8N0Z2 381 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 LRRC71Q8N4P6 559 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 DDX1Q92499 740 aaKnown RBP13.66□□□□□ -0.22
CLK3-206ENST00000562078 GPR20Q99678 358 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 WWP1Q9H0M0 922 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 SIAEQ9HAT2 523 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 SACM1LQ9NTJ5 587 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 IGSF9Q9P2J2 1179 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 PCNTO95613 3336 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 A0A0B4J269 797 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 FAM155AB1AL88 458 aaPredicted RBP13.66□□□□□ -0.22
CLK3-206ENST00000562078 ZC3H11AO75152 810 aaKnown RBP eCLIP13.66□□□□□ -0.22
CLK3-206ENST00000562078 ALDH3B2P48448 385 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 RPS3AP61247 264 aaKnown RBP13.66□□□□□ -0.22
CLK3-206ENST00000562078 CREB5Q02930 508 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 ZNF829Q3KNS6 432 aaPredicted RBP13.66□□□□□ -0.22
CLK3-206ENST00000562078 ZNF792Q3KQV3 632 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 FAM209AQ5JX71 171 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 CENPUQ71F23 418 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 ZBTB46Q86UZ6 589 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 FAM167AQ96KS9 214 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 ANLNQ9NQW6 1124 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 PACSIN3Q9UKS6 424 aa13.66□□□□□ -0.22
CLK3-206ENST00000562078 CLUHO75153 1309 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 J3QRK9 145 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 TOMM70O94826 608 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 VNN1O95497 513 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 C4BPAP04003 597 aaKnown RBP13.65□□□□□ -0.22
CLK3-206ENST00000562078 HMOX2P30519 316 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 NDST2P52849 883 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 GRB14Q14449 540 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 KCNJ8Q15842 424 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 WDR44Q5JSH3 913 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 CELF3Q5SZQ8 465 aaKnown RBP13.65□□□□□ -0.22
CLK3-206ENST00000562078 GET4Q7L5D6 327 aaPredicted RBP13.65□□□□□ -0.22
CLK3-206ENST00000562078 CHPT1Q8WUD6 406 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 COPS5Q92905 334 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 EME1Q96AY2 570 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 FBXL8Q96CD0 374 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 SERAC1Q96JX3 654 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 CEP44Q9C0F1 390 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 ZFYVE28Q9HCC9 887 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 GIN1Q9NXP7 522 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 NCKIPSDQ9NZQ3 722 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 CNTN3Q9P232 1028 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 DOCK3Q8IZD9 2030 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 ADGRA2Q96PE1 1338 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 UGT1A9O60656 530 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 SERPINA6P08185 405 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 UGT1A6P19224 532 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 UGT1A1P22309 533 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 UGT1A4P22310 534 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 UGT1A3P35503 534 aa13.65□□□□□ -0.22
CLK3-206ENST00000562078 UGT1A5P35504 534 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms