RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 CFIP05156 583 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 NDUFV2P19404 249 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 WASP42768 502 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 NDST1P52848 882 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 MAP3K7CLP57077 242 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 ARID5AQ03989 594 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 ZNF33AQ06730 810 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 CUL2Q13617 745 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 KIAA1211LQ6NV74 962 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 PPP1R2P3Q6NXS1 205 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 NUDT18Q6ZVK8 323 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 ZNF571Q7Z3V5 609 aaPredicted RBP14.63□□□□□ -0.07
LDLR-213ENST00000560502 ZNF677Q86XU0 584 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 SLC41A1Q8IVJ1 513 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 TTC39CQ8N584 583 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 C12orf29Q8N999 325 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 IPO4Q8TEX9 1081 aaKnown RBP14.63□□□□□ -0.07
LDLR-213ENST00000560502 CALR3Q96L12 384 aaKnown RBP14.63□□□□□ -0.07
LDLR-213ENST00000560502 NIF3L1Q9GZT8 377 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 NACA2Q9H009 215 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 SLC32A1Q9H598 525 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 FAM49BQ9NUQ9 324 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 NENFQ9UMX5 172 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 CNTN6Q9UQ52 1028 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 SCML2Q9UQR0 700 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 BAHCC1Q9P281 2608 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 ANKRD11Q6UB99 2663 aaPredicted RBP14.63□□□□□ -0.07
LDLR-213ENST00000560502 CKAP5Q14008 2032 aa14.63□□□□□ -0.07
LDLR-213ENST00000560502 ASPMQ8IZT6 3477 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 SPAARA0A1B0GVQ0 90 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 PRRT4C9JH25 899 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 FOXN3O00409 490 aaPredicted RBP14.62□□□□□ -0.07
LDLR-213ENST00000560502 CYP26A1O43174 497 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 HYAL3O43820 417 aaPredicted RBP14.62□□□□□ -0.07
LDLR-213ENST00000560502 CISD3P0C7P0 127 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 P4HA1P13674 534 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 TYRP14679 529 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 ARHGAP25P42331 645 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 MAGEA1P43355 309 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 INCA1Q0VD86 236 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 CCDC122Q5T0U0 273 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 KLHDC10Q6PID8 442 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 Q6ZNB5 142 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 CLEC20AQ6ZU45 233 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 RABEPKQ7Z6M1 372 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 RNF10Q8N5U6 811 aaKnown RBP14.62□□□□□ -0.07
LDLR-213ENST00000560502 DEFB119Q8N690 84 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 P2RY11Q96G91 374 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 XPO6Q96QU8 1125 aaKnown RBP14.62□□□□□ -0.07
LDLR-213ENST00000560502 TWNKQ96RR1 684 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 HNRNPABQ99729 332 aaKnown RBP14.62□□□□□ -0.07
LDLR-213ENST00000560502 BBS2Q9BXC9 721 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 NMUR1Q9HB89 426 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 PNPLA8Q9NP80 782 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 LZTFL1Q9NQ48 299 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 WDR35Q9P2L0 1181 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 NAGPAQ9UK23 515 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 SPEGQ15772 3267 aa14.62□□□□□ -0.07
LDLR-213ENST00000560502 A0A087X0T9 212 aa14.61□□□□□ -0.07
LDLR-213ENST00000560502 ZNF217O75362 1048 aa14.61□□□□□ -0.07
LDLR-213ENST00000560502 CLSTN1O94985 981 aa14.61□□□□□ -0.07
LDLR-213ENST00000560502 FAM228BP0C875 321 aa14.61□□□□□ -0.07
LDLR-213ENST00000560502 FAM200BP0CF97 657 aa14.61□□□□□ -0.07
LDLR-213ENST00000560502 ATP5C1P36542 298 aaKnown RBP14.61□□□□□ -0.07
LDLR-213ENST00000560502 TERF1P54274 439 aa14.61□□□□□ -0.07
LDLR-213ENST00000560502 SIM1P81133 766 aaPredicted RBP14.61□□□□□ -0.07
LDLR-213ENST00000560502 GFPT1Q06210 699 aaPredicted RBP14.61□□□□□ -0.07
LDLR-213ENST00000560502 TUBB2AQ13885 445 aa14.61□□□□□ -0.07
LDLR-213ENST00000560502 SPOPLQ6IQ16 392 aa14.61□□□□□ -0.07
LDLR-213ENST00000560502 CHPFQ8IZ52 775 aa14.61□□□□□ -0.07
LDLR-213ENST00000560502 MINDY1Q8N5J2 469 aa14.61□□□□□ -0.07
LDLR-213ENST00000560502 SLC30A5Q8TAD4 765 aa14.61□□□□□ -0.07
LDLR-213ENST00000560502 EPS8L1Q8TE68 723 aa14.61□□□□□ -0.07
LDLR-213ENST00000560502 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.61□□□□□ -0.07
LDLR-213ENST00000560502 TUBB2BQ9BVA1 445 aa14.61□□□□□ -0.07
LDLR-213ENST00000560502 GTPBP2Q9BX10 602 aaKnown RBP14.61□□□□□ -0.07
LDLR-213ENST00000560502 CD93Q9NPY3 652 aa14.61□□□□□ -0.07
LDLR-213ENST00000560502 DNAAF2Q9NVR5 837 aaKnown RBP14.61□□□□□ -0.07
LDLR-213ENST00000560502 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.61□□□□□ -0.07
LDLR-213ENST00000560502 ADAMTS1Q9UHI8 967 aa14.61□□□□□ -0.07
LDLR-213ENST00000560502 LSM7Q9UK45 103 aaKnown RBP14.61□□□□□ -0.07
LDLR-213ENST00000560502 FBXO10Q9UK96 956 aa14.61□□□□□ -0.07
LDLR-213ENST00000560502 CYP8B1Q9UNU6 501 aa14.61□□□□□ -0.07
LDLR-213ENST00000560502 MSRB2Q9Y3D2 182 aa14.61□□□□□ -0.07
LDLR-213ENST00000560502 A0A0A6YYK5 440 aaPredicted RBP14.6□□□□□ -0.07
LDLR-213ENST00000560502 FAM221BA6H8Z2 402 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 SRRM3A6NNA2 597 aaPredicted RBP14.6□□□□□ -0.07
LDLR-213ENST00000560502 GFRA2O00451 464 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 ARHGAP33O14559 1287 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 MDM4O15151 490 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 OPHN1O60890 802 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 GJB3O75712 270 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 GZMAP12544 262 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 CD59P13987 128 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 TNFAIP3P21580 790 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 ADORA2BP29275 332 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 DGKGP49619 791 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 GNG11P61952 73 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 FAM193AP78312 1265 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 IFI16Q16666 785 aaKnown RBP14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms