RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 PLXNA3P51805 1871 aa18.37■□□□□ 0.53
SNX1-208ENST00000559844 C2orf71A6NGG8 1288 aa18.37■□□□□ 0.53
SNX1-208ENST00000559844 GOLGA8MH3BSY2 632 aa18.37■□□□□ 0.53
SNX1-208ENST00000559844 EBAG9O00559 213 aa18.37■□□□□ 0.53
SNX1-208ENST00000559844 TBC1D4O60343 1298 aa18.37■□□□□ 0.53
SNX1-208ENST00000559844 FAM107AO95990 144 aa18.37■□□□□ 0.53
SNX1-208ENST00000559844 RBL1P28749 1068 aa18.37■□□□□ 0.53
SNX1-208ENST00000559844 OR1D2P34982 312 aa18.37■□□□□ 0.53
SNX1-208ENST00000559844 CCT5P48643 541 aa18.37■□□□□ 0.53
SNX1-208ENST00000559844 CREMQ03060 361 aa18.37■□□□□ 0.53
SNX1-208ENST00000559844 CBLBQ13191 982 aa18.37■□□□□ 0.53
SNX1-208ENST00000559844 SLC45A4Q5BKX6 768 aa18.37■□□□□ 0.53
SNX1-208ENST00000559844 OTUD1Q5VV17 481 aaPredicted RBP18.37■□□□□ 0.53
SNX1-208ENST00000559844 GPR65Q8IYL9 337 aa18.37■□□□□ 0.53
SNX1-208ENST00000559844 MRPL43Q8N983 215 aaKnown RBP18.37■□□□□ 0.53
SNX1-208ENST00000559844 ZMIZ2Q8NF64 920 aa18.37■□□□□ 0.53
SNX1-208ENST00000559844 OXCT2Q9BYC2 517 aaPredicted RBP18.37■□□□□ 0.53
SNX1-208ENST00000559844 ZMYND15Q9H091 742 aa18.37■□□□□ 0.53
SNX1-208ENST00000559844 KLC2Q9H0B6 622 aa18.37■□□□□ 0.53
SNX1-208ENST00000559844 LMAN2LQ9H0V9 348 aa18.37■□□□□ 0.53
SNX1-208ENST00000559844 RSPH14Q9UHP6 348 aa18.37■□□□□ 0.53
SNX1-208ENST00000559844 PTPRDP23468 1912 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 HACD1B0YJ81 288 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 TEX28O15482 410 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 ADAM12O43184 909 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 TMEM63AO94886 807 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 CNPP09543 421 aaKnown RBP18.36■□□□□ 0.53
SNX1-208ENST00000559844 CPB1P15086 417 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 KCNJ11Q14654 390 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 FASTKD3Q14CZ7 662 aaKnown RBP18.36■□□□□ 0.53
SNX1-208ENST00000559844 RASA2Q15283 850 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 EFHC2Q5JST6 749 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 SLC8B1Q6J4K2 584 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 PDE12Q6L8Q7 609 aaKnown RBP18.36■□□□□ 0.53
SNX1-208ENST00000559844 FOXR1Q6PIV2 292 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 SCML4Q8N228 414 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 MDM1Q8TC05 714 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 FAM161BQ96MY7 647 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 CCT8L2Q96SF2 557 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 ZCWPW1Q9H0M4 648 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 INTS9Q9NV88 658 aaKnown RBP18.36■□□□□ 0.53
SNX1-208ENST00000559844 FETUBQ9UGM5 382 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 SLC24A2Q9UI40 661 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 NAALADL1Q9UQQ1 740 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 USP3Q9Y6I4 520 aa18.36■□□□□ 0.53
SNX1-208ENST00000559844 HHLA1C9JL84 531 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 ZNF189O75820 626 aaPredicted RBP18.35■□□□□ 0.53
SNX1-208ENST00000559844 GRIN2CQ14957 1233 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 SLC39A12Q504Y0 691 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 HABP4Q5JVS0 413 aaKnown RBP18.35■□□□□ 0.53
SNX1-208ENST00000559844 FNBP1LQ5T0N5 605 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 SYPL2Q5VXT5 272 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 NCBP2-AS2Q69YL0 99 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 B4GALNT4Q76KP1 1039 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 TADA2BQ86TJ2 420 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 LRRTM3Q86VH5 581 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 SPATS2Q86XZ4 545 aaKnown RBP18.35■□□□□ 0.53
SNX1-208ENST00000559844 CCDC13Q8IYE1 715 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 ZNF473Q8WTR7 871 aaKnown RBP18.35■□□□□ 0.53
SNX1-208ENST00000559844 NTAN1Q96AB6 310 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 PGAP3Q96FM1 320 aaPredicted RBP18.35■□□□□ 0.53
SNX1-208ENST00000559844 QKIQ96PU8 341 aaKnown RBP eCLIP18.35■□□□□ 0.536e-10■■□□□ 13.4
SNX1-208ENST00000559844 KCNK16Q96T55 309 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 TRIM62Q9BVG3 475 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 EMILIN2Q9BXX0 1053 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 RABEP2Q9H5N1 569 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 RXFP1Q9HBX9 757 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 PNPLA8Q9NP80 782 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 EURLQ9NYK6 297 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 FNIP2Q9P278 1114 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 CTNNAL1Q9UBT7 734 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 TCRBV7S3A2A0A539 114 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 LTFP02788 710 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 GOT1P17174 413 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 SEC24CP53992 1094 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 CCDC38Q502W7 563 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 HFE2Q6ZVN8 426 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 DCP1BQ8IZD4 617 aaKnown RBP18.35■□□□□ 0.53
SNX1-208ENST00000559844 SLC7A14Q8TBB6 771 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 MRPL38Q96DV4 380 aaKnown RBP18.35■□□□□ 0.53
SNX1-208ENST00000559844 DMAP1Q9NPF5 467 aaPredicted RBP18.35■□□□□ 0.53
SNX1-208ENST00000559844 RAB6BQ9NRW1 208 aa18.35■□□□□ 0.53
SNX1-208ENST00000559844 PRRC2BQ5JSZ5 2229 aaKnown RBP18.35■□□□□ 0.53
SNX1-208ENST00000559844 YJEFN3A6XGL0 299 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 E7ENQ6 273 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 GCATO75600 419 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 F9P00740 461 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 ADH1AP07327 375 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 AMPD1P23109 780 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 MAGEA6P43360 314 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 GBE1Q04446 702 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 NME3Q13232 169 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 KLHL38Q2WGJ6 581 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 GPRIN1Q7Z2K8 1008 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 ANKMY2Q8IV38 441 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 PALM2Q8IXS6 379 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 TAB3Q8N5C8 712 aaPredicted RBP18.34■□□□□ 0.53
SNX1-208ENST00000559844 RNF139Q8WU17 664 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 PGLYRP2Q96PD5 576 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 KLHL5Q96PQ7 755 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms