RNA–Protein interactions for RNA: ENST00000558093.1

SPG11-206, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-206ENST00000558093 RAB21Q9UL25 225 aa3.83□□□□□ -1.8
SPG11-206ENST00000558093 TRPC5Q9UL62 973 aaPredicted RBP3.83□□□□□ -1.8
SPG11-206ENST00000558093 B3GNT3Q9Y2A9 372 aa3.83□□□□□ -1.8
SPG11-206ENST00000558093 SQORQ9Y6N5 450 aa3.83□□□□□ -1.8
SPG11-206ENST00000558093 SPATA31A5Q5VU36 1347 aa3.83□□□□□ -1.8
SPG11-206ENST00000558093 SPATA31A7Q8IWB4 1347 aa3.83□□□□□ -1.8
SPG11-206ENST00000558093 ZNF335Q9H4Z2 1342 aaPredicted RBP3.82□□□□□ -1.8
SPG11-206ENST00000558093 KIF28PB7ZC32 967 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 M0QYT0 321 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 TULP3O75386 442 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 CNTN5O94779 1100 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 TNFRSF6BO95407 300 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 SYF2O95926 243 aaKnown RBP3.82□□□□□ -1.8
SPG11-206ENST00000558093 TGM2P21980 687 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 CIITAP33076 1130 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 SLC37A1P57057 533 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 SF3A3Q12874 501 aaKnown RBP eCLIP3.82□□□□□ -1.8
SPG11-206ENST00000558093 MTX1Q13505 466 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 SPARCL1Q14515 664 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 ATPAF1Q5TC12 328 aaPredicted RBP3.82□□□□□ -1.8
SPG11-206ENST00000558093 C1orf228Q6PIY5 440 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 SLC39A5Q6ZMH5 540 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 COLCA1Q6ZS62 124 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 TECPR1Q7Z6L1 1165 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 MYLK4Q86YV6 388 aaPredicted RBP3.82□□□□□ -1.8
SPG11-206ENST00000558093 ZNF548Q8NEK5 533 aaPredicted RBP3.82□□□□□ -1.8
SPG11-206ENST00000558093 MPLKIPQ8TAP9 179 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 HMGB4Q8WW32 186 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 NLRP4Q96MN2 994 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 ZNF700Q9H0M5 742 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 TP63Q9H3D4 680 aaPredicted RBP3.82□□□□□ -1.8
SPG11-206ENST00000558093 OBP2BQ9NPH6 170 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 LRFN1Q9P244 771 aa3.82□□□□□ -1.8
SPG11-206ENST00000558093 A0A087WV62 115 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 LY6G6EA0A0G2JKS1 128 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 LGALS16A8MUM7 142 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 EIF5BO60841 1220 aaKnown RBP3.81□□□□□ -1.8
SPG11-206ENST00000558093 ZC3H11AO75152 810 aaKnown RBP eCLIP3.81□□□□□ -1.8
SPG11-206ENST00000558093 PPP6R2O75170 966 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 SGPL1O95470 568 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 NFATC1O95644 943 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 ITGA2BP08514 1039 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 RFPL3SP0C7P2 107 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 PSG1P11464 419 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 PEPDP12955 493 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 SERPINB3P29508 390 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 IL6STP40189 918 aaPredicted RBP3.81□□□□□ -1.8
SPG11-206ENST00000558093 KRTAP10-11P60412 298 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 B4GALNT1Q00973 533 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 TLE3Q04726 772 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 ICA1Q05084 483 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 DLGAP5Q15398 846 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 AWAT2Q6E213 333 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 TMEM88Q6PEY1 159 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 TOGARAM2Q6ZUX3 1019 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 CYB5R4Q7L1T6 521 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 IRF2BP2Q7Z5L9 587 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 ARL14EPQ8N8R7 260 aaPredicted RBP3.81□□□□□ -1.8
SPG11-206ENST00000558093 Q8N9P0 234 aaPredicted RBP3.81□□□□□ -1.8
SPG11-206ENST00000558093 SLC44A5Q8NCS7 719 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 VPS37AQ8NEZ2 397 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 LTV1Q96GA3 475 aaPredicted RBP3.81□□□□□ -1.8
SPG11-206ENST00000558093 MPHOSPH6Q99547 160 aaKnown RBP3.81□□□□□ -1.8
SPG11-206ENST00000558093 CRB3Q9BUF7 120 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 GATA5Q9BWX5 397 aaPredicted RBP3.81□□□□□ -1.8
SPG11-206ENST00000558093 BRD8Q9H0E9 1235 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 OSBPL5Q9H0X9 879 aaPredicted RBP3.81□□□□□ -1.8
SPG11-206ENST00000558093 AAMDCQ9H7C9 122 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 SFXN1Q9H9B4 322 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 DECR2Q9NUI1 292 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.81□□□□□ -1.8
SPG11-206ENST00000558093 COG5Q9UP83 839 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 SLC12A4Q9UP95 1085 aa3.81□□□□□ -1.8
SPG11-206ENST00000558093 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.81□□□□□ -1.8
SPG11-206ENST00000558093 LOC105369274A0A096LPK9 316 aa3.8□□□□□ -1.8
SPG11-206ENST00000558093 LOC102723532A0A0G2JNH3 316 aa3.8□□□□□ -1.8
SPG11-206ENST00000558093 CCDC194A0A1B0GVG4 234 aa3.8□□□□□ -1.8
SPG11-206ENST00000558093 ABHD14A-ACY1A0A1B0GW23 586 aa3.8□□□□□ -1.8
SPG11-206ENST00000558093 F5H423 210 aaPredicted RBP3.8□□□□□ -1.8
SPG11-206ENST00000558093 RHODO00212 210 aa3.8□□□□□ -1.8
SPG11-206ENST00000558093 PRPF4O43172 522 aaKnown RBP eCLIP3.8□□□□□ -1.8
SPG11-206ENST00000558093 KAT7O95251 611 aa3.8□□□□□ -1.8
SPG11-206ENST00000558093 LARGE1O95461 756 aa3.8□□□□□ -1.8
SPG11-206ENST00000558093 ALDOCP09972 364 aaKnown RBP3.8□□□□□ -1.8
SPG11-206ENST00000558093 ALDH7A1P49419 539 aaKnown RBP3.8□□□□□ -1.8
SPG11-206ENST00000558093 RPL15P61313 204 aaKnown RBP3.8□□□□□ -1.8
SPG11-206ENST00000558093 SHC2P98077 582 aa3.8□□□□□ -1.8
SPG11-206ENST00000558093 GAD2Q05329 585 aa3.8□□□□□ -1.8
SPG11-206ENST00000558093 SRSF1Q07955 248 aaKnown RBP eCLIP3.8□□□□□ -1.8
SPG11-206ENST00000558093 HNRNPA0Q13151 305 aaKnown RBP3.8□□□□□ -1.8
SPG11-206ENST00000558093 UBE4AQ14139 1066 aa3.8□□□□□ -1.8
SPG11-206ENST00000558093 PGM5Q15124 567 aa3.8□□□□□ -1.8
SPG11-206ENST00000558093 RPS6KA2Q15349 733 aa3.8□□□□□ -1.8
SPG11-206ENST00000558093 PUM3Q15397 648 aaKnown RBP3.8□□□□□ -1.8
SPG11-206ENST00000558093 ZACNQ401N2 412 aa3.8□□□□□ -1.8
SPG11-206ENST00000558093 MIDNQ504T8 468 aa3.8□□□□□ -1.8
SPG11-206ENST00000558093 MANEAQ5SRI9 462 aa3.8□□□□□ -1.8
SPG11-206ENST00000558093 ZNF474Q6S9Z5 364 aaPredicted RBP3.8□□□□□ -1.8
SPG11-206ENST00000558093 KLHL17Q6TDP4 642 aa3.8□□□□□ -1.8
SPG11-206ENST00000558093 B4GALNT4Q76KP1 1039 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms