RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 LGSNQ5TDP6 509 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 TMC7Q7Z402 723 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 METTL25Q8N6Q8 603 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 SGF29Q96ES7 293 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 EBNA1BP2Q99848 306 aaKnown RBP12.68□□□□□ -0.38
LDLR-205ENST00000557933 NUF2Q9BZD4 464 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 ZNF112Q9UJU3 913 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 GJA3Q9Y6H8 435 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 TMEM233B4DJY2 109 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 F8W8V4 182 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 CHADO15335 359 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 PLA2G6O60733 806 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 PDGFRBP09619 1106 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 GOT1P17174 413 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 XRCC1P18887 633 aaPredicted RBP12.68□□□□□ -0.38
LDLR-205ENST00000557933 MPSTP25325 297 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 GOLGA7BQ2TAP0 167 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 ATF7IP2Q5U623 682 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 CTU1Q7Z7A3 348 aaKnown RBP12.68□□□□□ -0.38
LDLR-205ENST00000557933 SNX32Q86XE0 403 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 CCDC185Q8N715 623 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 OPTNQ96CV9 577 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 TMA16Q96EY4 203 aaKnown RBP12.68□□□□□ -0.38
LDLR-205ENST00000557933 TMEM176AQ96HP8 235 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 CDRT15Q96T59 188 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 PPCSQ9HAB8 311 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 DMAP1Q9NPF5 467 aaPredicted RBP12.68□□□□□ -0.38
LDLR-205ENST00000557933 ADARB2Q9NS39 739 aaKnown RBP12.68□□□□□ -0.38
LDLR-205ENST00000557933 SYBUQ9NX95 663 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 GALNT8Q9NY28 637 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 CPSF3Q9UKF6 684 aaKnown RBP12.68□□□□□ -0.38
LDLR-205ENST00000557933 DTNAQ9Y4J8 743 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 C2CD4BA6NLJ0 364 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 XPO1O14980 1071 aaKnown RBP12.68□□□□□ -0.38
LDLR-205ENST00000557933 ATP9BO43861 1147 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 CREB3O43889 395 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 HDCP19113 662 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 ADORA2BP29275 332 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 PTPN7P35236 360 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 ZNF143P52747 638 aaPredicted RBP12.68□□□□□ -0.38
LDLR-205ENST00000557933 THOP1P52888 689 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 TMEM62Q0P6H9 643 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 ZNF460Q14592 562 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 STILQ15468 1287 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 CNGA3Q16281 694 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 NADK2Q4G0N4 442 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 PPP1R26Q5T8A7 1209 aaPredicted RBP12.68□□□□□ -0.38
LDLR-205ENST00000557933 ACAD11Q709F0 780 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 AMIGO2Q86SJ2 522 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 NME8Q8N427 588 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 ICA1LQ8NDH6 482 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 CATSPER2Q96P56 530 aa12.68□□□□□ -0.38
LDLR-205ENST00000557933 NR1H4Q96RI1 486 aaPredicted RBP12.68□□□□□ -0.38
LDLR-205ENST00000557933 PLIN3O60664 434 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 ARIH2O95376 493 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 HSPA4LO95757 839 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 RALBP11234 206 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 PDCD2Q16342 344 aaPredicted RBP12.67□□□□□ -0.38
LDLR-205ENST00000557933 ANKRD12Q6UB98 2062 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 KDELC2Q7Z4H8 507 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 DDX43Q9NXZ2 648 aaKnown RBP12.67□□□□□ -0.38
LDLR-205ENST00000557933 TXNDC16Q9P2K2 825 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 PCDHGC3Q9UN70 934 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 PPME1Q9Y570 386 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 PARP14Q460N5 1801 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 SPATA31C2B4DYI2 1134 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 H3BNX3 289 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 TK2O00142 265 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 PRKCGP05129 697 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 PRKCHP24723 683 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 PSMB4P28070 264 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 CRHR1P34998 444 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 ALDH1A3P47895 512 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 TAP1Q03518 808 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 TMED1Q13445 227 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 PACS1Q6VY07 963 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 CPNE9Q8IYJ1 553 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 ZC3H15Q8WU90 426 aaKnown RBP12.67□□□□□ -0.38
LDLR-205ENST00000557933 ZFAND2BQ8WV99 257 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 LPAR1Q92633 364 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 ERLEC1Q96DZ1 483 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 DCUN1D1Q96GG9 259 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 ZNF512Q96ME7 567 aaPredicted RBP12.67□□□□□ -0.38
LDLR-205ENST00000557933 CNPY3Q9BT09 278 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 DEFB129Q9H1M3 183 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 CDT1Q9H211 546 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 GMPR2Q9P2T1 348 aaKnown RBP12.67□□□□□ -0.38
LDLR-205ENST00000557933 FETUBQ9UGM5 382 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 SSX2IPQ9Y2D8 614 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 MAFBQ9Y5Q3 323 aaPredicted RBP12.67□□□□□ -0.38
LDLR-205ENST00000557933 RPS6KL1Q9Y6S9 549 aa12.67□□□□□ -0.38
LDLR-205ENST00000557933 KLF11O14901 512 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 PHGDHO43175 533 aaKnown RBP12.66□□□□□ -0.38
LDLR-205ENST00000557933 VTNP04004 478 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 ITGA2BP08514 1039 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 PTPN1P18031 435 aaKnown RBP12.66□□□□□ -0.38
LDLR-205ENST00000557933 SDC4P31431 198 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 GALK1P51570 392 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 HDAC4P56524 1084 aa12.66□□□□□ -0.38
LDLR-205ENST00000557933 CDKL1Q00532 357 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms