RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 TRIM73Q86UV7 250 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 CROCCP3Q8IVE0 287 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 BANPQ8N9N5 519 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 HTR3CQ8WXA8 447 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 LRTOMTQ8WZ04 291 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 BSNDQ8WZ55 320 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 CPT1BQ92523 772 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 HPS1Q92902 700 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 DCPSQ96C86 337 aaKnown RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 APBA2Q99767 749 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 PLGRKTQ9HBL7 147 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 HPS4Q9NQG7 708 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 TRNAU1APQ9NX07 287 aaKnown RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 CCDC167Q9P0B6 97 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 PLLPQ9Y342 182 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 SNED1Q8TER0 1413 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 PKD1L3Q7Z443 1732 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 CCDC88AQ3V6T2 1871 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 SPATA31A5Q5VU36 1347 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 SPATA31A7Q8IWB4 1347 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 PLCH1Q4KWH8 1693 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 LACTBL1A8MY62 500 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 APOC4-APOC2K7ER74 178 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 KPNA4O00629 521 aaPredicted RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 BIRC5O15392 142 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 PHGDHO43175 533 aaKnown RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 SIN3BO75182 1162 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 USP12O75317 370 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 APOC2P02655 101 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 APOA4P06727 396 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 VDRP11473 427 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 LRPAP1P30533 357 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 PTPN7P35236 360 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 NDST1P52848 882 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 RHBDL3P58872 404 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 GTF2BQ00403 316 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 IRF9Q00978 393 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 GAD2Q05329 585 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 MGAT5Q09328 741 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 PRKD1Q15139 912 aaPredicted RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 CYP1B1Q16678 543 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 LY6KQ17RY6 165 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 ZIK1Q3SY52 487 aaPredicted RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 LIN52Q52LA3 116 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 PERM1Q5SV97 790 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 ZFP1Q6P2D0 407 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 KYAT3Q6YP21 454 aaKnown RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 PHF13Q86YI8 300 aaPredicted RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 SCN4BQ8IWT1 228 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 SNX31Q8N9S9 440 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 OR52K1Q8NGK4 314 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 JOSD2Q8TAC2 188 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 CELF6Q96J87 481 aaKnown RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 PPP1R10Q96QC0 940 aaKnown RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 EBF4Q9BQW3 602 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 C6orf62Q9GZU0 229 aaPredicted RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 CROTQ9UKG9 612 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 TSPAN16Q9UKR8 245 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 PNMA8BQ9ULN7 279 aaPredicted RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 PPM1HQ9ULR3 514 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 PIN4Q9Y237 131 aaKnown RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 DGKBQ9Y6T7 804 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 BAZ2AQ9UIF9 1905 aaKnown RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 A0A096LPK6 155 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 A0A1B0GVG6 124 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 E5RJQ4 531 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 RNF103O00237 685 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 RHOBTB1O94844 696 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 SUPT7LO94864 414 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 BPGMP07738 259 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 TSPAN8P19075 237 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 ME2P23368 584 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 RPL5P46777 297 aaKnown RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 WDR4P57081 412 aaKnown RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 RALGDSQ12967 914 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 STX5Q13190 355 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 MYBPC2Q14324 1141 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 SFT2D3Q587I9 215 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 SH3D19Q5HYK7 790 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 CIAPIN1Q6FI81 312 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 AAGABQ6PD74 315 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 BNIPLQ7Z465 357 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 IL31RAQ8NI17 732 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 MKL1Q969V6 931 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 PRMT6Q96LA8 375 aaPredicted RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 FAM193BQ96PV7 902 aaPredicted RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 EPAS1Q99814 870 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 OMDQ99983 421 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 SYT15Q9BQS2 421 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 NOL11Q9H8H0 719 aaKnown RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 HOXC10Q9NYD6 342 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 SELENONQ9NZV5 590 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 VTI1BQ9UEU0 232 aa5.1□□□□□ -1.59
SYNE2-223ENST00000557005 CPSF3Q9UKF6 684 aaKnown RBP5.1□□□□□ -1.59
SYNE2-223ENST00000557005 PAPSS1O43252 624 aaPredicted RBP5.09□□□□□ -1.59
SYNE2-223ENST00000557005 MAGEC1O60732 1142 aa5.09□□□□□ -1.59
SYNE2-223ENST00000557005 ENTPD3O75355 529 aa5.09□□□□□ -1.59
SYNE2-223ENST00000557005 CRTAMO95727 393 aa5.09□□□□□ -1.59
SYNE2-223ENST00000557005 OAS1P00973 400 aaKnown RBP5.09□□□□□ -1.59
SYNE2-223ENST00000557005 EPHA3P29320 983 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms