RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	FBXL12	Q9NXK8	326 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	AK5	Q9Y6K8	562 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	IGSF10	Q6WRI0	2623 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	ACTN4	O43707	911 aa	Known RBP	13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	RNASEH1	O60930	286 aa	Known RBP	13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	PRB1	P04280	392 aa		13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	ABCB4	P21439	1286 aa		13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	RPL13	P26373	211 aa	Known RBP	13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	GTF2H1	P32780	548 aa		13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	PSMC2	P35998	433 aa	Known RBP	13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	EIF2S3	P41091	472 aa	Known RBP	13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	GALC	P54803	685 aa		13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	SEMG2	Q02383	582 aa		13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	MPP7	Q5T2T1	576 aa		13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	BSPRY	Q5W0U4	402 aa		13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	KRT39	Q6A163	491 aa		13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	BHLHA9	Q7RTU4	235 aa		13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	GATAD2A	Q86YP4	633 aa		13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	ZC3H3	Q8IXZ2	948 aa	Known RBP	13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	EDEM1	Q92611	657 aa		13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	SEMA4D	Q92854	862 aa		13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	CNDP2	Q96KP4	475 aa	Known RBP	13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	IPO9	Q96P70	1041 aa	Known RBP	13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	RSPH9	Q9H1X1	276 aa	Predicted RBP	13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	PABPC3	Q9H361	631 aa	Known RBP	13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	RAB20	Q9NX57	234 aa		13.18	□□□□□ -0.3
SHMT2-223	ENST00000556689	LRRC72	A6NJI9	287 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689		K7ELQ4	463 aa	Predicted RBP	13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	TULP2	O00295	520 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	XPO1	O14980	1071 aa	Known RBP	13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	RRP8	O43159	456 aa	Known RBP	13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	TBL1X	O60907	577 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	RFPL3	O75679	317 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	MYL1	P05976	194 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	HSP90AA1	P07900	732 aa	Known RBP	13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	CD38	P28907	300 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	CD70	P32970	193 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	ST8SIA6	P61647	398 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	TARDBP	Q13148	414 aa	Known RBP eCLIP	13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	ADAM9	Q13443	819 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	PIK3R6	Q5UE93	754 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	ATL3	Q6DD88	541 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	NCEH1	Q6PIU2	408 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	UNC45B	Q8IWX7	931 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	ZNF557	Q8N988	423 aa	Predicted RBP	13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	SAP25	Q8TEE9	199 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	COL26A1	Q96A83	441 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	TTC17	Q96AE7	1141 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	SLC6A18	Q96N87	628 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	IRX2	Q9BZI1	471 aa	Predicted RBP	13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	NRSN2	Q9GZP1	204 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	NEUROG2	Q9H2A3	272 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	MTG2	Q9H4K7	406 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	PRORY	Q9H606	182 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	AASDHPPT	Q9NRN7	309 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	ABCC13	Q9NSE7	274 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	USP25	Q9UHP3	1055 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	CFAP45	Q9UL16	551 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	GOLGA4	Q13439	2230 aa	Known RBP	13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	CABIN1	Q9Y6J0	2220 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	KNL1	Q8NG31	2342 aa		13.17	□□□□□ -0.3
SHMT2-223	ENST00000556689	YJEFN3	A6XGL0	299 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689		E7ENQ6	273 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	CBX4	O00257	560 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	ATXN7	O15265	892 aa	Predicted RBP	13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	YKT6	O15498	198 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	IRAK2	O43187	625 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	WNT1	P04628	370 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	SLC11A2	P49281	568 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	SGSH	P51688	502 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	ADIG	Q0VDE8	80 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	DNAJC3	Q13217	504 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	RTP5	Q14D33	572 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	SHB	Q15464	509 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	GOLGA7B	Q2TAP0	167 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	RFWD3	Q6PCD5	774 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	SIX6OS1	Q8N1H7	587 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	EID2	Q8N6I1	236 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	LSM14A	Q8ND56	463 aa	Known RBP	13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	FBXL13	Q8NEE6	735 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	OR2T34	Q8NGX1	318 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	FIBIN	Q8TAL6	211 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	WFDC5	Q8TCV5	224 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	TATDN2	Q93075	761 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	CCDC47	Q96A33	483 aa	Known RBP	13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	OMD	Q99983	421 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	EBF2	Q9HAK2	575 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	GDF3	Q9NR23	364 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	STIM2	Q9P246	746 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	HESX1	Q9UBX0	185 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	RCOR1	Q9UKL0	485 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	TSPAN16	Q9UKR8	245 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	MAPK8IP1	Q9UQF2	711 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	RAI2	Q9Y5P3	530 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	CKAP5	Q14008	2032 aa		13.16	□□□□□ -0.3
SHMT2-223	ENST00000556689	NUMA1	Q14980	2115 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	GOLGA6L7	A0A1B0GV03	622 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689		A0A1W2PP55	124 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	MID1	O15344	667 aa		13.15	□□□□□ -0.3
SHMT2-223	ENST00000556689	MSI1	O43347	362 aa	Known RBP	13.15	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms