RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 EFHC2Q5JST6 749 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 ATAT1Q5SQI0 421 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 RAP1GAP2Q684P5 730 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 TANGO2Q6ICL3 276 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 KLHDC10Q6PID8 442 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 NPNTQ6UXI9 565 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 B4GALNT4Q76KP1 1039 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 SND1Q7KZF4 910 aaKnown RBP eCLIP11.13□□□□□ -0.63
TDP1-211ENST00000555178 ZNF572Q7Z3I7 529 aaPredicted RBP11.13□□□□□ -0.63
TDP1-211ENST00000555178 CTAGE6Q86UF2 777 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 BBS7Q8IWZ6 715 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 CTAGE4Q8IX94 777 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 KLHL7Q8IXQ5 586 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 ZNF683Q8IZ20 524 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 PQLC3Q8N755 202 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 PRELID2Q8N945 189 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 PCDH19Q8TAB3 1148 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 C1orf54Q8WWF1 131 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 IGSF8Q969P0 613 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 NTAN1Q96AB6 310 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 ASIC4Q96FT7 647 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 ZFYVE19Q96K21 471 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 GCNAQ96QF7 691 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 HINFPQ9BQA5 517 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 TUBB2BQ9BVA1 445 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 OLA1Q9NTK5 396 aaKnown RBP11.13□□□□□ -0.63
TDP1-211ENST00000555178 CD207Q9UJ71 328 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 TSPAN3O60637 253 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 CST8O60676 142 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 PECAM1P16284 738 aaPredicted RBP11.13□□□□□ -0.63
TDP1-211ENST00000555178 ITIH3Q06033 890 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 SCAPQ12770 1279 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 SEMA3BQ13214 749 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 ANKRD20A8PQ5CZ79 823 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 TEX35Q5T0J7 233 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 RFX6Q8HWS3 928 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 CFAP52Q8N1V2 620 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 CEP112Q8N8E3 955 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 FAM71BQ8TC56 605 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 RSAD2Q8WXG1 361 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 ASB16Q96NS5 453 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 CSPG4P5Q96PW8 444 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 PRMT1Q99873 361 aaKnown RBP11.13□□□□□ -0.63
TDP1-211ENST00000555178 NDFIP2Q9NV92 336 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 CHD5Q8TDI0 1954 aa11.13□□□□□ -0.63
TDP1-211ENST00000555178 TICRRQ7Z2Z1 1910 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 ATG2BQ96BY7 2078 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 ZNF197O14709 1029 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 MBTPS2O43462 519 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 CNTN5O94779 1100 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 SRGAP2BP0DMP2 458 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 AMPD1P23109 780 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 SNX1Q13596 522 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 PPP2R5DQ14738 602 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 PPP2R5EQ16537 467 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 TRIM68Q6AZZ1 485 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 CES5AQ6NT32 575 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 TTC27Q6P3X3 843 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 PARM1Q6UWI2 310 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 Q6ZNB5 142 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 FGF14Q92915 247 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 BHMTQ93088 406 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 KRT12Q99456 494 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 C10orf88Q9H8K7 445 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 TDP1Q9NUW8 608 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.12□□□□□ -0.63
TDP1-211ENST00000555178 MPP6Q9NZW5 540 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 OR12D3Q9UGF7 316 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 VANGL2Q9ULK5 521 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 ARHGAP26Q9UNA1 814 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 HBS1LQ9Y450 684 aaKnown RBP11.12□□□□□ -0.63
TDP1-211ENST00000555178 LRIG2O94898 1065 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 AVPR1AP37288 418 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 KCNJ1P48048 391 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 ZNF77Q15935 545 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 ARL13BQ3SXY8 428 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 ARHGAP15Q53QZ3 475 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 ALFQ53S48 1182 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 ELMSAN1Q6PJG2 1045 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 PLD5Q8N7P1 536 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 LEMD2Q8NC56 503 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 PRICKLE1Q96MT3 831 aaPredicted RBP11.12□□□□□ -0.63
TDP1-211ENST00000555178 RNF157Q96PX1 679 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 NCAPGQ9BPX3 1015 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 KXD1Q9BQD3 176 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 ZNF670Q9BS34 389 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 ARHGEF4Q9NR80 690 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 RNF14Q9UBS8 474 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 CLEC4EQ9ULY5 219 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 WNT6Q9Y6F9 365 aa11.12□□□□□ -0.63
TDP1-211ENST00000555178 OTOL1A6NHN0 477 aaPredicted RBP11.11□□□□□ -0.63
TDP1-211ENST00000555178 ACSL4O60488 711 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 GBP2P32456 591 aaPredicted RBP11.11□□□□□ -0.63
TDP1-211ENST00000555178 PTPN7P35236 360 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 MLLT6P55198 1093 aaPredicted RBP11.11□□□□□ -0.63
TDP1-211ENST00000555178 COPS2P61201 443 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 RPS24P62847 133 aaKnown RBP11.11□□□□□ -0.63
TDP1-211ENST00000555178 RING1Q06587 406 aa11.11□□□□□ -0.63
TDP1-211ENST00000555178 AUHQ13825 339 aaKnown RBP11.11□□□□□ -0.63
TDP1-211ENST00000555178 PDK2Q15119 407 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms