RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 FBF1Q8TES7 1133 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 CFAP36Q96G28 342 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 ZNF333Q96JL9 665 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 ROPN1BQ9BZX4 212 aaPredicted RBP13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 FAM107BQ9H098 131 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 CWH43Q9H720 699 aa13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 ROPN1Q9HAT0 212 aaPredicted RBP13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 PRDM5Q9NQX1 630 aaPredicted RBP13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 ZMYND8Q9ULU4 1186 aaPredicted RBP13.13□□□□□ -0.31
VIPAS39-206ENST00000553888 CHADO15335 359 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 ACRP10323 421 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 SPARCL1Q14515 664 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 SMAD1Q15797 465 aaKnown RBP13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 ARTNQ5T4W7 220 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 RASIP1Q5U651 963 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 C14orf80Q86SX3 495 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 SCML4Q8N228 414 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 LRRC43Q8N309 656 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 TTPALQ9BTX7 342 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 SEZ6LQ9BYH1 1024 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 KLC2Q9H0B6 622 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 SMOC2Q9H3U7 446 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 RABGEF1Q9UJ41 708 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 MAGED2Q9UNF1 606 aaPredicted RBP13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 PTPRSQ13332 1948 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 DOCK4Q8N1I0 1966 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 WDR27A2RRH5 827 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 HMBSP08397 361 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 PSMB4P28070 264 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 CRADDP78560 199 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 EFEMP1Q12805 493 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 LRRC14Q15048 493 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 SRRM1Q8IYB3 904 aaKnown RBP13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 ZNF567Q8N184 647 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 VPS52Q8N1B4 723 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 COLGALT1Q8NBJ5 622 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 FUBP3Q96I24 572 aaKnown RBP eCLIP13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 C8orf48Q96LL4 319 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 EURLQ9NYK6 297 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 RRN3Q9NYV6 651 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 MPP6Q9NZW5 540 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 SCML2Q9UQR0 700 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 C5orf60A6NFR6 353 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 TBC1D4O60343 1298 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 ABHD2P08910 425 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 CSF2RAP15509 400 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 MMP13P45452 471 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 ALDH7A1P49419 539 aaKnown RBP13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 SF3A3Q12874 501 aaKnown RBP eCLIP13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 TAF10Q12962 218 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 MPP2Q14168 576 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 STAT4Q14765 748 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 VSTM1Q6UX27 236 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 LEKR1Q6ZMV7 388 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 MIB1Q86YT6 1006 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 PALM2Q8IXS6 379 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 PDCD7Q8N8D1 485 aaKnown RBP13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 FCRL2Q96LA5 508 aaPredicted RBP13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 EPAS1Q99814 870 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 MRPL9Q9BYD2 267 aaKnown RBP13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 PLAC1Q9HBJ0 212 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 ARHGEF38Q9NXL2 777 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 TEX264Q9Y6I9 313 aa13.12□□□□□ -0.31
VIPAS39-206ENST00000553888 A0A0A0MRY4 1105 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 OR6C75A6NL08 312 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 TRIM66O15016 1216 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 ATF6P18850 670 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 IKBKEQ14164 716 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 PKN2Q16513 984 aaKnown RBP13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 ZSCAN26Q16670 478 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 SPOUT1Q5T280 376 aaKnown RBP13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 PRPF39Q86UA1 669 aaKnown RBP13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 FBXO22Q8NEZ5 403 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 BCAS4Q8TDM0 211 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 AUTS2Q8WXX7 1259 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 FBXO32Q969P5 355 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 SPATA13Q96N96 652 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 TTC25Q96NG3 672 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 TRIM43BA6NCK2 446 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 E7EVH7 732 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 HOXA2O43364 376 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 OR1D2P34982 312 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 AIF1P55008 147 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 ZBTB17Q13105 803 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 GPR17Q13304 367 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 PDK1Q15118 436 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 ANKRD42Q8N9B4 389 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 ATP11CQ8NB49 1132 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 USP33Q8TEY7 942 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 TRIM43Q96BQ3 446 aaPredicted RBP13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 TOX2Q96NM4 488 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 AGAP3Q96P47 875 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 GORASP1Q9BQQ3 440 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 LTBP2Q14767 1821 aa13.11□□□□□ -0.31
VIPAS39-206ENST00000553888 TCEA3O75764 348 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 CLTBP09497 229 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 IFNAR2P48551 515 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 PIK3R6Q5UE93 754 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 MON1AQ86VX9 555 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 ARFGAP2Q8N6H7 521 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms